19 items (Rhodospirillum rubrum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Rru_A1753	High-affinity nickel-transporter; Belongs to the NiCoT transporter (TC 2.A.52) family. (329 aa)
	Rru_A1918	Binding-protein-dependent transport systems inner membrane component. (333 aa)
	Rru_A1919	Binding-protein-dependent transport systems inner membrane component. (310 aa)
	Rru_A2012	Binding-protein-dependent transport systems inner membrane component. (276 aa)
	Rru_A2013	Binding-protein-dependent transport systems inner membrane component. (326 aa)
	Rru_A2176	Binding-protein-dependent transport systems inner membrane component. (324 aa)
	Rru_A2177	Binding-protein-dependent transport systems inner membrane component. (363 aa)
	nikE	ABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. (277 aa)
	nikD	ABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. (261 aa)
	NikC	Binding-protein-dependent transport systems inner membrane component. (299 aa)
	Rru_A2276	Binding-protein-dependent transport systems inner membrane component. (314 aa)
	Rru_A2357	Binding-protein-dependent transport systems inner membrane component. (336 aa)
	Rru_A2358	Binding-protein-dependent transport systems inner membrane component. (325 aa)
	Rru_A0590	Binding-protein-dependent transport systems inner membrane component. (302 aa)
	Rru_A0591	Binding-protein-dependent transport systems inner membrane component. (308 aa)
	Rru_A0800	Binding-protein-dependent transport systems inner membrane component. (356 aa)
	Rru_A0801	Binding-protein-dependent transport systems inner membrane component. (296 aa)
	Rru_A0980	Binding-protein-dependent transport systems inner membrane component. (313 aa)
	Rru_A0981	Binding-protein-dependent transport systems inner membrane component. (314 aa)

Your Current Organism:

Rhodospirillum rubrum

NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NikC	Rru_A0591	Rru_A2275	Rru_A0591	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.877
NikC	Rru_A0800	Rru_A2275	Rru_A0800	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.870
NikC	Rru_A0980	Rru_A2275	Rru_A0980	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.898
NikC	Rru_A1918	Rru_A2275	Rru_A1918	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.879
NikC	Rru_A2013	Rru_A2275	Rru_A2013	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.868
NikC	Rru_A2176	Rru_A2275	Rru_A2176	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.861
NikC	Rru_A2276	Rru_A2275	Rru_A2276	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.996
NikC	Rru_A2357	Rru_A2275	Rru_A2357	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.896
NikC	nikD	Rru_A2275	Rru_A2274	Binding-protein-dependent transport systems inner membrane component.	ABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.	0.999
NikC	nikE	Rru_A2275	Rru_A2273	Binding-protein-dependent transport systems inner membrane component.	ABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.	0.998
Rru_A0590	Rru_A0591	Rru_A0590	Rru_A0591	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.997
Rru_A0590	Rru_A0800	Rru_A0590	Rru_A0800	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.756
Rru_A0590	Rru_A0980	Rru_A0590	Rru_A0980	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.863
Rru_A0590	Rru_A1918	Rru_A0590	Rru_A1918	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.765
Rru_A0590	Rru_A2013	Rru_A0590	Rru_A2013	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.875
Rru_A0590	Rru_A2176	Rru_A0590	Rru_A2176	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.837
Rru_A0590	Rru_A2276	Rru_A0590	Rru_A2276	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.878
Rru_A0590	Rru_A2357	Rru_A0590	Rru_A2357	Binding-protein-dependent transport systems inner membrane component.	Binding-protein-dependent transport systems inner membrane component.	0.775
Rru_A0590	nikD	Rru_A0590	Rru_A2274	Binding-protein-dependent transport systems inner membrane component.	ABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.	0.965
Rru_A0590	nikE	Rru_A0590	Rru_A2273	Binding-protein-dependent transport systems inner membrane component.	ABC transporter component; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family.	0.960

page 1 of 10

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About