STRINGSTRING
AAZ69008.1 AAZ69008.1 spt4 spt4 endA endA spt5 spt5 polC polC AAZ70299.1 AAZ70299.1 AAZ70512.1 AAZ70512.1 AAZ70517.1 AAZ70517.1 AAZ70694.1 AAZ70694.1 cca cca AAZ71042.1 AAZ71042.1 AAZ71444.1 AAZ71444.1 AAZ71890.1 AAZ71890.1 AAZ72115.1 AAZ72115.1 AAZ72572.1 AAZ72572.1 AAZ72573.1 AAZ72573.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AAZ69008.1Conserved hypothetical protein. (325 aa)
spt4DNA-directed RNA polymerase, subunit E'; Stimulates transcription elongation; Belongs to the archaeal Spt4 family. (61 aa)
endAtRNA-intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). (350 aa)
spt5LSU ribosomal protein L24A; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (152 aa)
polCDNA polymerase II large subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). (1146 aa)
AAZ70299.1Conserved hypothetical protein. (445 aa)
AAZ70512.13-isopropylmalate dehydratase. (256 aa)
AAZ70517.1Conserved hypothetical protein. (240 aa)
AAZ70694.1single-stranded-DNA-specific exonuclease RecJ. (466 aa)
ccatRNA adenylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. (454 aa)
AAZ71042.1Conserved hypothetical protein. (452 aa)
AAZ71444.1Conserved hypothetical protein. (318 aa)
AAZ71890.1Conserved hypothetical protein. (466 aa)
AAZ72115.1Conserved hypothetical protein. (240 aa)
AAZ72572.1Conserved hypothetical protein. (646 aa)
AAZ72573.1Conserved hypothetical protein. (932 aa)
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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