STRINGSTRING
AAZ69008.1 AAZ69008.1 spt4 spt4 endA endA spt5 spt5 polC polC AAZ70512.1 AAZ70512.1 AAZ70517.1 AAZ70517.1 AAZ70694.1 AAZ70694.1 cca cca AAZ71042.1 AAZ71042.1 AAZ72115.1 AAZ72115.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AAZ69008.1Conserved hypothetical protein. (325 aa)
spt4DNA-directed RNA polymerase, subunit E'; Stimulates transcription elongation; Belongs to the archaeal Spt4 family. (61 aa)
endAtRNA-intron endonuclease; Endonuclease that removes tRNA introns. Cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3' cyclic phosphate and 5'-OH termini. Recognizes a pseudosymmetric substrate in which 2 bulged loops of 3 bases are separated by a stem of 4 bp (By similarity). (350 aa)
spt5LSU ribosomal protein L24A; Stimulates transcription elongation; Belongs to the archaeal Spt5 family. (152 aa)
polCDNA polymerase II large subunit; Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3'- to 5'-direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase (By similarity). (1146 aa)
AAZ70512.13-isopropylmalate dehydratase. (256 aa)
AAZ70517.1Conserved hypothetical protein. (240 aa)
AAZ70694.1single-stranded-DNA-specific exonuclease RecJ. (466 aa)
ccatRNA adenylyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. (454 aa)
AAZ71042.1Conserved hypothetical protein. (452 aa)
AAZ72115.1Conserved hypothetical protein. (240 aa)
Your Current Organism:
Methanosarcina barkeri Fusaro
NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro
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