(6 nodes) ABC 3 transport family, and Periplasmic space network (Methanosarcina barkeri Fusaro)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AAZ69491.1	Iron compounds ABC transporter, ATP-binding protein. (256 aa)
	AAZ69492.1	Iron compounds ABC transporter, permease protein. (339 aa)
	AAZ71185.1	Hypothetical protein. (378 aa)
	AAZ71186.1	iron(III) ABC transporter, permease protein. (343 aa)
	AAZ71187.1	iron(III) ABC transporter, ATP-binding protein. (269 aa)
	AAZ71196.1	iron(III) ABC transporter, solute-binding protein. (393 aa)

Your Current Organism:

Methanosarcina barkeri Fusaro

NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAZ69491.1	AAZ69492.1	Mbar_A0509	Mbar_A0510	Iron compounds ABC transporter, ATP-binding protein.	Iron compounds ABC transporter, permease protein.	0.984
AAZ69491.1	AAZ71185.1	Mbar_A0509	Mbar_A2260	Iron compounds ABC transporter, ATP-binding protein.	Hypothetical protein.	0.927
AAZ69491.1	AAZ71186.1	Mbar_A0509	Mbar_A2261	Iron compounds ABC transporter, ATP-binding protein.	iron(III) ABC transporter, permease protein.	0.933
AAZ69491.1	AAZ71196.1	Mbar_A0509	Mbar_A2271	Iron compounds ABC transporter, ATP-binding protein.	iron(III) ABC transporter, solute-binding protein.	0.922
AAZ69492.1	AAZ69491.1	Mbar_A0510	Mbar_A0509	Iron compounds ABC transporter, permease protein.	Iron compounds ABC transporter, ATP-binding protein.	0.984
AAZ69492.1	AAZ71185.1	Mbar_A0510	Mbar_A2260	Iron compounds ABC transporter, permease protein.	Hypothetical protein.	0.912
AAZ69492.1	AAZ71187.1	Mbar_A0510	Mbar_A2262	Iron compounds ABC transporter, permease protein.	iron(III) ABC transporter, ATP-binding protein.	0.938
AAZ69492.1	AAZ71196.1	Mbar_A0510	Mbar_A2271	Iron compounds ABC transporter, permease protein.	iron(III) ABC transporter, solute-binding protein.	0.918
AAZ71185.1	AAZ69491.1	Mbar_A2260	Mbar_A0509	Hypothetical protein.	Iron compounds ABC transporter, ATP-binding protein.	0.927
AAZ71185.1	AAZ69492.1	Mbar_A2260	Mbar_A0510	Hypothetical protein.	Iron compounds ABC transporter, permease protein.	0.912
AAZ71185.1	AAZ71186.1	Mbar_A2260	Mbar_A2261	Hypothetical protein.	iron(III) ABC transporter, permease protein.	0.914
AAZ71185.1	AAZ71187.1	Mbar_A2260	Mbar_A2262	Hypothetical protein.	iron(III) ABC transporter, ATP-binding protein.	0.938
AAZ71186.1	AAZ69491.1	Mbar_A2261	Mbar_A0509	iron(III) ABC transporter, permease protein.	Iron compounds ABC transporter, ATP-binding protein.	0.933
AAZ71186.1	AAZ71185.1	Mbar_A2261	Mbar_A2260	iron(III) ABC transporter, permease protein.	Hypothetical protein.	0.914
AAZ71186.1	AAZ71187.1	Mbar_A2261	Mbar_A2262	iron(III) ABC transporter, permease protein.	iron(III) ABC transporter, ATP-binding protein.	0.985
AAZ71186.1	AAZ71196.1	Mbar_A2261	Mbar_A2271	iron(III) ABC transporter, permease protein.	iron(III) ABC transporter, solute-binding protein.	0.920
AAZ71187.1	AAZ69492.1	Mbar_A2262	Mbar_A0510	iron(III) ABC transporter, ATP-binding protein.	Iron compounds ABC transporter, permease protein.	0.938
AAZ71187.1	AAZ71185.1	Mbar_A2262	Mbar_A2260	iron(III) ABC transporter, ATP-binding protein.	Hypothetical protein.	0.938
AAZ71187.1	AAZ71186.1	Mbar_A2262	Mbar_A2261	iron(III) ABC transporter, ATP-binding protein.	iron(III) ABC transporter, permease protein.	0.985
AAZ71187.1	AAZ71196.1	Mbar_A2262	Mbar_A2271	iron(III) ABC transporter, ATP-binding protein.	iron(III) ABC transporter, solute-binding protein.	0.932

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