(16 nodes) Periplasmic binding protein network (Methanosarcina barkeri Fusaro)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AAZ69966.1	Iron ABC transporter, solute-binding protein. (373 aa)
	AAZ69449.1	Fe(III) dicitrate ABC transporter, permease. (384 aa)
	AAZ69495.1	ABC transporter, solute-binding protein. (365 aa)
	AAZ70142.1	Iron ABC transporter, solute-binding protein. (438 aa)
	AAZ70144.1	ABC transporter, solute-binding protein. (408 aa)
	AAZ70249.1	ABC transporter, solute-binding protein. (370 aa)
	AAZ70808.1	iron(III) dicitrate-binding protein. (401 aa)
	AAZ70809.1	iron(III) dicitrate-binding protein. (401 aa)
	AAZ70810.1	iron(III) dicitrate-binding protein. (403 aa)
	AAZ71185.1	Hypothetical protein. (378 aa)
	AAZ71188.1	iron(III) ABC transporter, solute-binding protein. (360 aa)
	AAZ71189.1	iron(III) ABC transporter, solute-binding protein. (362 aa)
	AAZ71196.1	iron(III) ABC transporter, solute-binding protein. (393 aa)
	AAZ71315.1	iron(III) ABC transporter, solute-binding protein. (408 aa)
	AAZ71316.1	iron(III) ABC transporter, solute-binding protein. (375 aa)
	AAZ71638.1	Putative iron complex transport system substrate-binding protein. (427 aa)

Your Current Organism:

Methanosarcina barkeri Fusaro

NCBI taxonomy Id: 269797
Other names: M. barkeri str. Fusaro, Methanosarcina barkeri DSM 804, Methanosarcina barkeri str. Fusaro, Methanosarcina barkeri strain Fusaro

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AAZ69449.1	AAZ71189.1	Mbar_A0467	Mbar_A2264	Fe(III) dicitrate ABC transporter, permease.	iron(III) ABC transporter, solute-binding protein.	0.550
AAZ69449.1	AAZ71315.1	Mbar_A0467	Mbar_A2395	Fe(III) dicitrate ABC transporter, permease.	iron(III) ABC transporter, solute-binding protein.	0.494
AAZ69966.1	AAZ71316.1	Mbar_A0998	Mbar_A2396	Iron ABC transporter, solute-binding protein.	iron(III) ABC transporter, solute-binding protein.	0.492
AAZ70142.1	AAZ71188.1	Mbar_A1174	Mbar_A2263	Iron ABC transporter, solute-binding protein.	iron(III) ABC transporter, solute-binding protein.	0.703
AAZ71188.1	AAZ70142.1	Mbar_A2263	Mbar_A1174	iron(III) ABC transporter, solute-binding protein.	Iron ABC transporter, solute-binding protein.	0.703
AAZ71188.1	AAZ71189.1	Mbar_A2263	Mbar_A2264	iron(III) ABC transporter, solute-binding protein.	iron(III) ABC transporter, solute-binding protein.	0.527
AAZ71189.1	AAZ69449.1	Mbar_A2264	Mbar_A0467	iron(III) ABC transporter, solute-binding protein.	Fe(III) dicitrate ABC transporter, permease.	0.550
AAZ71189.1	AAZ71188.1	Mbar_A2264	Mbar_A2263	iron(III) ABC transporter, solute-binding protein.	iron(III) ABC transporter, solute-binding protein.	0.527
AAZ71315.1	AAZ69449.1	Mbar_A2395	Mbar_A0467	iron(III) ABC transporter, solute-binding protein.	Fe(III) dicitrate ABC transporter, permease.	0.494
AAZ71316.1	AAZ69966.1	Mbar_A2396	Mbar_A0998	iron(III) ABC transporter, solute-binding protein.	Iron ABC transporter, solute-binding protein.	0.492

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