Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Gmet_1686 | arnC | Gmet_1686 | Gmet_0885 | Undecaprenyl-phosphate glycosyltransferase, putative. | UDP-4-deoxy-4-formamido-L-arabinose-- undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinosyltransferase. | 0.562 |
| Gmet_1686 | arnD | Gmet_1686 | Gmet_0882 | Undecaprenyl-phosphate glycosyltransferase, putative. | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | 0.503 |
| Gmet_1870 | arnD | Gmet_1870 | Gmet_0882 | GDP-mannose--undecaprenyl-phosphate mannosyltransferase. | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | 0.503 |
| Gmet_1935 | dxr | Gmet_1935 | Gmet_1256 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 1-deoxy-D-xylulose-5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 0.411 |
| Gmet_1935 | dxs-1 | Gmet_1935 | Gmet_2822 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.497 |
| Gmet_1935 | dxs-2 | Gmet_1935 | Gmet_1934 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.881 |
| Gmet_1935 | ispB | Gmet_1935 | Gmet_2455 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.920 |
| Gmet_1935 | ispE | Gmet_1935 | Gmet_2849 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.450 |
| Gmet_1935 | ispG | Gmet_1935 | Gmet_1353 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.408 |
| Gmet_1935 | ispH | Gmet_1935 | Gmet_0866 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.934 |
| Gmet_1935 | uppS | Gmet_1935 | Gmet_1254 | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Undecaprenyl diphosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.967 |
| Gmet_2892 | arnD | Gmet_2892 | Gmet_0882 | Undecaprenyl-phosphate glycosyltransferase, DPM1-like family. | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | 0.672 |
| arnC | Gmet_1686 | Gmet_0885 | Gmet_1686 | UDP-4-deoxy-4-formamido-L-arabinose-- undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinosyltransferase. | Undecaprenyl-phosphate glycosyltransferase, putative. | 0.562 |
| arnC | arnD | Gmet_0885 | Gmet_0882 | UDP-4-deoxy-4-formamido-L-arabinose-- undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinosyltransferase. | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | 0.991 |
| arnD | Gmet_1686 | Gmet_0882 | Gmet_1686 | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | Undecaprenyl-phosphate glycosyltransferase, putative. | 0.503 |
| arnD | Gmet_1870 | Gmet_0882 | Gmet_1870 | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | GDP-mannose--undecaprenyl-phosphate mannosyltransferase. | 0.503 |
| arnD | Gmet_2892 | Gmet_0882 | Gmet_2892 | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | Undecaprenyl-phosphate glycosyltransferase, DPM1-like family. | 0.672 |
| arnD | arnC | Gmet_0882 | Gmet_0885 | undecaprenyl-diphospho-4-formamido-4-deoxy-L- arabinose deformylase, putative. | UDP-4-deoxy-4-formamido-L-arabinose-- undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinosyltransferase. | 0.991 |
| dxr | Gmet_1935 | Gmet_1256 | Gmet_1935 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | Trans-isoprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.411 |
| dxr | dxs-1 | Gmet_1256 | Gmet_2822 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.974 |
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