(40 nodes) Peptidyl-histidine phosphorylation network (Salegentibacter mishustinae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KRG30404.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (741 aa)
	KRG30756.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (885 aa)
	KRG28925.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	KRG29081.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (262 aa)
	KRG29192.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
	KRG29193.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (584 aa)
	KRG29224.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1214 aa)
	KRG29225.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (737 aa)
	KRG29259.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	KRG28250.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (641 aa)
	KRG28256.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (366 aa)
	KRG28257.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	KRG28268.1	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (909 aa)
	KRG28281.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
	KRG28358.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (737 aa)
	KRG28376.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)
	KRG28628.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (994 aa)
	KRG28645.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1013 aa)
	KRG27701.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1168 aa)
	KRG27706.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (922 aa)
	KRG27713.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
	KRG27779.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)
	KRG27804.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (669 aa)
	KRG27810.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (482 aa)
	KRG27926.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
	KRG27953.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	KRG27495.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (805 aa)
	KRG27501.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	KRG27596.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	KRG27133.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	KRG27134.1	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	KRG27152.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1447 aa)
	KRG27212.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1277 aa)
	KRG27213.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	KRG30069.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	KRG30072.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	KRG30086.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	KRG30117.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	KRG30118.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	APR42_15470	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)

Your Current Organism:

Salegentibacter mishustinae

NCBI taxonomy Id: 270918
Other names: DSM 23404, KCTC 12263, KMM 6049, LMG 22584, LMG:22584, NBRC 100592, S. mishustinae, Salegentibacter mishustinae Nedashkovskaya et al. 2005

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APR42_15470	KRG27152.1	APR42_15470	APR42_11610	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
APR42_15470	KRG27495.1	APR42_15470	APR42_10470	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
APR42_15470	KRG27701.1	APR42_15470	APR42_08050	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.840
APR42_15470	KRG27713.1	APR42_15470	APR42_08110	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
APR42_15470	KRG27810.1	APR42_15470	APR42_08635	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
APR42_15470	KRG27953.1	APR42_15470	APR42_09405	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
APR42_15470	KRG28268.1	APR42_15470	APR42_05630	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.875
APR42_15470	KRG28358.1	APR42_15470	APR42_06100	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
APR42_15470	KRG29192.1	APR42_15470	APR42_04470	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
APR42_15470	KRG29193.1	APR42_15470	APR42_04475	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
APR42_15470	KRG29224.1	APR42_15470	APR42_04630	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
APR42_15470	KRG29259.1	APR42_15470	APR42_04810	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
APR42_15470	KRG30404.1	APR42_15470	APR42_00640	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
KRG27133.1	KRG27134.1	APR42_11505	APR42_11510	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.685
KRG27133.1	KRG27495.1	APR42_11505	APR42_10470	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.915
KRG27133.1	KRG27501.1	APR42_11505	APR42_10500	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
KRG27133.1	KRG27701.1	APR42_11505	APR42_08050	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
KRG27133.1	KRG27713.1	APR42_11505	APR42_08110	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KRG27133.1	KRG27810.1	APR42_11505	APR42_08635	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRG27133.1	KRG27926.1	APR42_11505	APR42_09265	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444

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