43 items (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067D5C6	Uncharacterized protein. (68 aa)
	A0A067DK24	Uncharacterized protein. (664 aa)
	A0A067DNQ7	Uncharacterized protein. (130 aa)
	A0A067DTF2	Uncharacterized protein. (85 aa)
	A0A067DWK4	Uncharacterized protein. (361 aa)
	A0A067ECQ8	Protein kinase domain-containing protein. (1440 aa)
	A0A067EEI9	UDENN domain-containing protein. (844 aa)
	A0A067EG91	Uncharacterized protein. (2949 aa)
	A0A067EH17	Uncharacterized protein. (503 aa)
	A0A067EI02	Lzipper-MIP1 domain-containing protein. (503 aa)
	A0A067EJ79	Uncharacterized protein. (416 aa)
	A0A067EN32	Uncharacterized protein. (1294 aa)
	A0A067ENF7	V-SNARE coiled-coil homology domain-containing protein. (1108 aa)
	A0A067ENK3	Uncharacterized protein. (122 aa)
	A0A067EPE2	Uncharacterized protein. (570 aa)
	A0A067EQR9	Uncharacterized protein. (127 aa)
	A0A067EV86	Uncharacterized protein. (142 aa)
	A0A067EXS7	Uncharacterized protein. (201 aa)
	A0A067FA29	Uncharacterized protein. (333 aa)
	A0A067FK37	Uncharacterized protein. (252 aa)
	A0A067FNE6	Uncharacterized protein. (290 aa)
	A0A067FNE8	V-SNARE coiled-coil homology domain-containing protein. (1155 aa)
	A0A067FXI4	SAM-dependent MTase DRM-type domain-containing protein. (697 aa)
	A0A067FZB7	Uncharacterized protein. (1389 aa)
	A0A067FZX6	Uncharacterized protein. (360 aa)
	A0A067G254	Uncharacterized protein. (542 aa)
	A0A067G555	PORR domain-containing protein. (403 aa)
	A0A067G5M5	Uncharacterized protein. (595 aa)
	A0A067G742	Uncharacterized protein. (87 aa)
	A0A067G9S4	Uncharacterized protein. (1494 aa)
	A0A067GB89	F-box domain-containing protein. (218 aa)
	A0A067GEN4	Uncharacterized protein. (358 aa)
	A0A067GIB3	PPR_long domain-containing protein. (519 aa)
	A0A067GIT4	Uncharacterized protein. (444 aa)
	A0A067GLF2	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (696 aa)
	A0A067GT15	Uncharacterized protein. (737 aa)
	A0A067GTM3	Uncharacterized protein. (691 aa)
	A0A067H0H3	Uncharacterized protein. (806 aa)
	A0A067H2E0	Uncharacterized protein. (205 aa)
	A0A067H3G5	Uncharacterized protein. (623 aa)
	A0A067H3R1	Uncharacterized protein. (552 aa)
	A0A067H401	Uncharacterized protein. (344 aa)
	A0A067HCP1	Uncharacterized protein. (623 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067D5C6	A0A067DTF2	Uncharacterized protein.	Uncharacterized protein.	0.418
A0A067D5C6	A0A067DWK4	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A067D5C6	A0A067EV86	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A067D5C6	A0A067EXS7	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A067D5C6	A0A067G254	Uncharacterized protein.	Uncharacterized protein.	0.439
A0A067D5C6	A0A067GB89	Uncharacterized protein.	F-box domain-containing protein.	0.509
A0A067D5C6	A0A067GT15	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A067D5C6	A0A067H3G5	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A067DK24	A0A067DNQ7	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A067DK24	A0A067EI02	Uncharacterized protein.	Lzipper-MIP1 domain-containing protein.	0.451
A0A067DK24	A0A067EN32	Uncharacterized protein.	Uncharacterized protein.	0.456
A0A067DK24	A0A067FZB7	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A067DK24	A0A067G742	Uncharacterized protein.	Uncharacterized protein.	0.454
A0A067DK24	A0A067GEN4	Uncharacterized protein.	Uncharacterized protein.	0.447
A0A067DK24	A0A067GT15	Uncharacterized protein.	Uncharacterized protein.	0.419
A0A067DNQ7	A0A067DK24	Uncharacterized protein.	Uncharacterized protein.	0.549
A0A067DNQ7	A0A067GEN4	Uncharacterized protein.	Uncharacterized protein.	0.425
A0A067DTF2	A0A067D5C6	Uncharacterized protein.	Uncharacterized protein.	0.418
A0A067DTF2	A0A067EV86	Uncharacterized protein.	Uncharacterized protein.	0.478
A0A067DTF2	A0A067G555	Uncharacterized protein.	PORR domain-containing protein.	0.452