15 items (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067GWW7	RNase_PH domain-containing protein. (100 aa)
	A0A067CZ75	RNase_PH domain-containing protein. (151 aa)
	A0A067D6G6	S1 domain-containing protein. (327 aa)
	A0A067DQC7	Uncharacterized protein. (302 aa)
	A0A067EHY9	HRDC domain-containing protein. (914 aa)
	A0A067ETG9	Uncharacterized protein. (237 aa)
	A0A067F1L2	Uncharacterized protein. (465 aa)
	A0A067FF27	Uncharacterized protein. (252 aa)
	A0A067FFF8	HRDC domain-containing protein. (821 aa)
	A0A067FZE9	Uncharacterized protein. (242 aa)
	A0A067G142	RNase_PH domain-containing protein. (151 aa)
	A0A067G161	RNase_PH_C domain-containing protein. (108 aa)
	A0A067G1Y6	S1 domain-containing protein. (238 aa)
	A0A067G7K2	RNB domain-containing protein. (332 aa)
	A0A067GJB6	RNase_PH domain-containing protein. (273 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067CZ75	A0A067D6G6	RNase_PH domain-containing protein.	S1 domain-containing protein.	0.989
A0A067CZ75	A0A067DQC7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.987
A0A067CZ75	A0A067EHY9	RNase_PH domain-containing protein.	HRDC domain-containing protein.	0.966
A0A067CZ75	A0A067ETG9	RNase_PH domain-containing protein.	Uncharacterized protein.	0.990
A0A067CZ75	A0A067F1L2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.985
A0A067CZ75	A0A067FF27	RNase_PH domain-containing protein.	Uncharacterized protein.	0.936
A0A067CZ75	A0A067FFF8	RNase_PH domain-containing protein.	HRDC domain-containing protein.	0.966
A0A067CZ75	A0A067FZE9	RNase_PH domain-containing protein.	Uncharacterized protein.	0.899
A0A067CZ75	A0A067G142	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.543
A0A067CZ75	A0A067G161	RNase_PH domain-containing protein.	RNase_PH_C domain-containing protein.	0.670
A0A067CZ75	A0A067G1Y6	RNase_PH domain-containing protein.	S1 domain-containing protein.	0.987
A0A067CZ75	A0A067G7K2	RNase_PH domain-containing protein.	RNB domain-containing protein.	0.899
A0A067CZ75	A0A067GJB6	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.973
A0A067CZ75	A0A067GWW7	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.973
A0A067D6G6	A0A067CZ75	S1 domain-containing protein.	RNase_PH domain-containing protein.	0.989
A0A067D6G6	A0A067DQC7	S1 domain-containing protein.	Uncharacterized protein.	0.997
A0A067D6G6	A0A067EHY9	S1 domain-containing protein.	HRDC domain-containing protein.	0.991
A0A067D6G6	A0A067ETG9	S1 domain-containing protein.	Uncharacterized protein.	0.998
A0A067D6G6	A0A067F1L2	S1 domain-containing protein.	Uncharacterized protein.	0.998
A0A067D6G6	A0A067FF27	S1 domain-containing protein.	Uncharacterized protein.	0.996