16 items (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067GWW7	RNase_PH domain-containing protein. (100 aa)
	A0A067D6G6	S1 domain-containing protein. (327 aa)
	A0A067DQC7	Uncharacterized protein. (302 aa)
	A0A067ETG9	Uncharacterized protein. (237 aa)
	A0A067F1L2	Uncharacterized protein. (465 aa)
	A0A067FF27	Uncharacterized protein. (252 aa)
	A0A067FZE9	Uncharacterized protein. (242 aa)
	A0A067G142	RNase_PH domain-containing protein. (151 aa)
	A0A067G161	RNase_PH_C domain-containing protein. (108 aa)
	A0A067G1Y6	S1 domain-containing protein. (238 aa)
	A0A067G2A7	Uncharacterized protein. (809 aa)
	A0A067G4D7	Uncharacterized protein. (283 aa)
	A0A067CZ75	RNase_PH domain-containing protein. (151 aa)
	A0A067G7C9	Uncharacterized protein. (281 aa)
	A0A067G7K2	RNB domain-containing protein. (332 aa)
	A0A067GJB6	RNase_PH domain-containing protein. (273 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067CZ75	A0A067D6G6	RNase_PH domain-containing protein.	S1 domain-containing protein.	0.989
A0A067CZ75	A0A067DQC7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.987
A0A067CZ75	A0A067ETG9	RNase_PH domain-containing protein.	Uncharacterized protein.	0.990
A0A067CZ75	A0A067F1L2	RNase_PH domain-containing protein.	Uncharacterized protein.	0.985
A0A067CZ75	A0A067FF27	RNase_PH domain-containing protein.	Uncharacterized protein.	0.936
A0A067CZ75	A0A067FZE9	RNase_PH domain-containing protein.	Uncharacterized protein.	0.899
A0A067CZ75	A0A067G142	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.543
A0A067CZ75	A0A067G161	RNase_PH domain-containing protein.	RNase_PH_C domain-containing protein.	0.670
A0A067CZ75	A0A067G1Y6	RNase_PH domain-containing protein.	S1 domain-containing protein.	0.987
A0A067CZ75	A0A067G2A7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.540
A0A067CZ75	A0A067G4D7	RNase_PH domain-containing protein.	Uncharacterized protein.	0.540
A0A067CZ75	A0A067G7C9	RNase_PH domain-containing protein.	Uncharacterized protein.	0.540
A0A067CZ75	A0A067G7K2	RNase_PH domain-containing protein.	RNB domain-containing protein.	0.899
A0A067CZ75	A0A067GJB6	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.973
A0A067CZ75	A0A067GWW7	RNase_PH domain-containing protein.	RNase_PH domain-containing protein.	0.973
A0A067D6G6	A0A067CZ75	S1 domain-containing protein.	RNase_PH domain-containing protein.	0.989
A0A067D6G6	A0A067DQC7	S1 domain-containing protein.	Uncharacterized protein.	0.997
A0A067D6G6	A0A067ETG9	S1 domain-containing protein.	Uncharacterized protein.	0.998
A0A067D6G6	A0A067F1L2	S1 domain-containing protein.	Uncharacterized protein.	0.998
A0A067D6G6	A0A067FF27	S1 domain-containing protein.	Uncharacterized protein.	0.996