44 items (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067D3M8	Uncharacterized protein. (76 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
	A0A067D5J2	Uncharacterized protein. (140 aa)
	A0A067D6G6	S1 domain-containing protein. (327 aa)
	A0A067DAW2	Uncharacterized protein. (792 aa)
	A0A067DBP7	Uncharacterized protein. (150 aa)
	A0A067DDE9	Uncharacterized protein. (80 aa)
	A0A067DDF2	Uncharacterized protein. (77 aa)
	A0A067DFT4	Uncharacterized protein. (61 aa)
	A0A067DJ75	Uncharacterized protein. (101 aa)
	A0A067DJD6	Uncharacterized protein. (274 aa)
	A0A067DL48	Uncharacterized protein. (66 aa)
	A0A067DMU2	F-box domain-containing protein. (412 aa)
	A0A067DNT9	Uncharacterized protein. (209 aa)
	A0A067DPH0	Nudix hydrolase domain-containing protein. (322 aa)
	A0A067DQC7	Uncharacterized protein. (302 aa)
	A0A067DYC9	Sm domain-containing protein. (91 aa)
	A0A067EQN9	Uncharacterized protein. (172 aa)
	A0A067ETG9	Uncharacterized protein. (237 aa)
	A0A067ETV6	Uncharacterized protein. (297 aa)
	A0A067EV53	Not3 domain-containing protein. (576 aa)
	A0A067EVW1	NOT2_3_5 domain-containing protein. (220 aa)
	A0A067EWL7	Uncharacterized protein. (292 aa)
	A0A067EXM4	Uncharacterized protein. (59 aa)
	A0A067EXS4	RPOL4c domain-containing protein. (78 aa)
	A0A067F1L2	Uncharacterized protein. (465 aa)
	A0A067F896	Uncharacterized protein. (274 aa)
	A0A067FAC4	Uncharacterized protein. (112 aa)
	A0A067FC91	Sm domain-containing protein. (95 aa)
	A0A067FDX8	Uncharacterized protein. (680 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (87 aa)
	A0A067FT10	Uncharacterized protein. (186 aa)
	A0A067FT53	Uncharacterized protein. (100 aa)
	A0A067FTA8	Uncharacterized protein. (280 aa)
	A0A067FVK4	Uncharacterized protein. (274 aa)
	A0A067G038	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
	A0A067G1Y6	S1 domain-containing protein. (238 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (107 aa)
	A0A067G604	Uncharacterized protein. (551 aa)
	A0A067G609	Uncharacterized protein. (52 aa)
	A0A067GC90	NOT2_3_5 domain-containing protein. (736 aa)
	A0A067H104	Uncharacterized protein. (738 aa)
	A0A067H1N6	Uncharacterized protein. (699 aa)
	A0A067H470	Uncharacterized protein. (1498 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A067D3M8	A0A067D6G6	A0A067D3M8	A0A067D6G6	Uncharacterized protein.	S1 domain-containing protein.	0.618
A0A067D3M8	A0A067DPH0	A0A067D3M8	A0A067DPH0	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.906
A0A067D3M8	A0A067DYC9	A0A067D3M8	A0A067DYC9	Uncharacterized protein.	Sm domain-containing protein.	0.603
A0A067D3M8	A0A067FC91	A0A067D3M8	A0A067FC91	Uncharacterized protein.	Sm domain-containing protein.	0.570
A0A067D3M8	A0A067G038	A0A067D3M8	A0A067G038	Uncharacterized protein.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.708
A0A067D3M8	LSM1	A0A067D3M8	A0A067G2P4	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.570
A0A067D3M8	LSM3	A0A067D3M8	A0A067D5I1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.656
A0A067D3M8	LSM5	A0A067D3M8	A0A067FQZ6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.649
A0A067D5J2	A0A067D6G6	A0A067D5J2	A0A067D6G6	Uncharacterized protein.	S1 domain-containing protein.	0.618
A0A067D5J2	A0A067DPH0	A0A067D5J2	A0A067DPH0	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.906
A0A067D5J2	A0A067DYC9	A0A067D5J2	A0A067DYC9	Uncharacterized protein.	Sm domain-containing protein.	0.603
A0A067D5J2	A0A067FC91	A0A067D5J2	A0A067FC91	Uncharacterized protein.	Sm domain-containing protein.	0.570
A0A067D5J2	A0A067G038	A0A067D5J2	A0A067G038	Uncharacterized protein.	Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.	0.708
A0A067D5J2	LSM1	A0A067D5J2	A0A067G2P4	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.570
A0A067D5J2	LSM3	A0A067D5J2	A0A067D5I1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.656
A0A067D5J2	LSM5	A0A067D5J2	A0A067FQZ6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.649
A0A067D6G6	A0A067D3M8	A0A067D6G6	A0A067D3M8	S1 domain-containing protein.	Uncharacterized protein.	0.618
A0A067D6G6	A0A067D5J2	A0A067D6G6	A0A067D5J2	S1 domain-containing protein.	Uncharacterized protein.	0.618
A0A067D6G6	A0A067DDE9	A0A067D6G6	A0A067DDE9	S1 domain-containing protein.	Uncharacterized protein.	0.618
A0A067D6G6	A0A067DDF2	A0A067D6G6	A0A067DDF2	S1 domain-containing protein.	Uncharacterized protein.	0.618