25 items (Citrus sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067H9J3	IPPc domain-containing protein. (321 aa)
	A0A067GW43	IPPc domain-containing protein. (657 aa)
	A0A067GPP3	Inositol-1-monophosphatase. (369 aa)
	A0A067EN69	IPPc domain-containing protein. (506 aa)
	A0A067F0F2	IPPc domain-containing protein. (381 aa)
	A0A067FMR6	IPPc domain-containing protein. (535 aa)
	A0A067G3J7	Uncharacterized protein. (381 aa)
	A0A067E8T3	IPPc domain-containing protein. (1133 aa)
	A0A067E6D6	Uncharacterized protein. (179 aa)
	A0A067E127	SWIM-type domain-containing protein. (475 aa)
	A0A067DQ71	TYR_PHOSPHATASE_2 domain-containing protein. (283 aa)
	A0A067DNA2	IPPc domain-containing protein. (678 aa)
	A0A067DN90	Uncharacterized protein. (290 aa)
	A0A067DES3	Tyrosine-protein phosphatase domain-containing protein. (393 aa)
	A0A067DB25	Uncharacterized protein. (103 aa)
	A0A067G4I7	IPPc domain-containing protein. (580 aa)
	A0A067G7V3	Uncharacterized protein. (207 aa)
	A0A067DB02	IPPc domain-containing protein. (437 aa)
	A0A067GBQ7	IPPc domain-containing protein. (896 aa)
	A0A067GBX0	Uncharacterized protein. (252 aa)
	A0A067GFQ7	Inositol-1-monophosphatase. (306 aa)
	A0A067GKE9	Uncharacterized protein. (473 aa)
	A0A067EFF9	IPPc domain-containing protein. (447 aa)
	A0A067E9G2	Uncharacterized protein. (302 aa)
	A0A067EIL0	Uncharacterized protein. (208 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067DB25	A0A067DES3	Uncharacterized protein.	Tyrosine-protein phosphatase domain-containing protein.	0.604
A0A067DES3	A0A067DB25	Tyrosine-protein phosphatase domain-containing protein.	Uncharacterized protein.	0.604
A0A067DNA2	A0A067EIL0	IPPc domain-containing protein.	Uncharacterized protein.	0.912
A0A067E6D6	A0A067E9G2	Uncharacterized protein.	Uncharacterized protein.	0.460
A0A067E6D6	A0A067EIL0	Uncharacterized protein.	Uncharacterized protein.	0.894
A0A067E6D6	A0A067GFQ7	Uncharacterized protein.	Inositol-1-monophosphatase.	0.458
A0A067E6D6	A0A067GPP3	Uncharacterized protein.	Inositol-1-monophosphatase.	0.485
A0A067E9G2	A0A067E6D6	Uncharacterized protein.	Uncharacterized protein.	0.460
A0A067E9G2	A0A067EIL0	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A067E9G2	A0A067G3J7	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A067E9G2	A0A067G7V3	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A067E9G2	A0A067GFQ7	Uncharacterized protein.	Inositol-1-monophosphatase.	0.911
A0A067E9G2	A0A067GKE9	Uncharacterized protein.	Uncharacterized protein.	0.424
A0A067E9G2	A0A067GPP3	Uncharacterized protein.	Inositol-1-monophosphatase.	0.914
A0A067EIL0	A0A067DNA2	Uncharacterized protein.	IPPc domain-containing protein.	0.912
A0A067EIL0	A0A067E6D6	Uncharacterized protein.	Uncharacterized protein.	0.894
A0A067EIL0	A0A067E9G2	Uncharacterized protein.	Uncharacterized protein.	0.943
A0A067EIL0	A0A067G3J7	Uncharacterized protein.	Uncharacterized protein.	0.904
A0A067EIL0	A0A067G7V3	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A067EIL0	A0A067GFQ7	Uncharacterized protein.	Inositol-1-monophosphatase.	0.943