(12 nodes) Formation of anatomical boundary network (Citrus sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067FB08	Uncharacterized protein. (77 aa)
	A0A067FM45	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1093 aa)
	A0A067FQP3	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (210 aa)
	A0A067FZ21	Uncharacterized protein. (395 aa)
	A0A067G1Z5	LOB domain-containing protein. (192 aa)
	A0A067GDM8	Uncharacterized protein. (78 aa)
	A0A067GHT0	Uncharacterized protein. (3676 aa)
	A0A067GMY9	Homeobox domain-containing protein. (594 aa)
	A0A067GW84	Uncharacterized protein. (463 aa)
	A0A067H2V2	NAC domain-containing protein. (392 aa)
	A0A067HEH0	Uncharacterized protein. (2240 aa)
	A0A067EEC4	NAC domain-containing protein. (384 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067EEC4	A0A067FB08	NAC domain-containing protein.	Uncharacterized protein.	0.508
A0A067EEC4	A0A067GDM8	NAC domain-containing protein.	Uncharacterized protein.	0.519
A0A067FB08	A0A067EEC4	Uncharacterized protein.	NAC domain-containing protein.	0.508
A0A067FM45	A0A067FQP3	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.935
A0A067FM45	A0A067G1Z5	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	LOB domain-containing protein.	0.471
A0A067FQP3	A0A067FM45	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.935
A0A067FQP3	A0A067G1Z5	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	LOB domain-containing protein.	0.471
A0A067G1Z5	A0A067FM45	LOB domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.471
A0A067G1Z5	A0A067FQP3	LOB domain-containing protein.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.471
A0A067GDM8	A0A067EEC4	Uncharacterized protein.	NAC domain-containing protein.	0.519
A0A067GDM8	A0A067H2V2	Uncharacterized protein.	NAC domain-containing protein.	0.421
A0A067H2V2	A0A067GDM8	NAC domain-containing protein.	Uncharacterized protein.	0.421