(79 nodes) DNA-binding pseudobarrel domain superfamily network (Citrus sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067GQ76	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (578 aa)
	A0A067DHN9	Uncharacterized protein. (130 aa)
	A0A067DEF9	Uncharacterized protein. (313 aa)
	A0A067DC33	TF-B3 domain-containing protein. (450 aa)
	A0A067D935	TF-B3 domain-containing protein. (69 aa)
	A0A067E0E6	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (694 aa)
	A0A067HEU1	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (699 aa)
	A0A067H9R9	Uncharacterized protein. (508 aa)
	A0A067H9F6	Uncharacterized protein. (467 aa)
	A0A067H8T0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (716 aa)
	A0A067H654	TF-B3 domain-containing protein. (105 aa)
	A0A067H3S6	TF-B3 domain-containing protein. (401 aa)
	A0A067GYZ1	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (297 aa)
	A0A067GWZ4	TF-B3 domain-containing protein. (241 aa)
	A0A067GR00	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (773 aa)
	A0A067GQL6	TF-B3 domain-containing protein. (386 aa)
	A0A067GIB5	Uncharacterized protein. (278 aa)
	A0A067GI12	TF-B3 domain-containing protein. (516 aa)
	A0A067GCK9	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (809 aa)
	A0A067GB15	TF-B3 domain-containing protein. (440 aa)
	A0A067GAH0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (694 aa)
	A0A067G9R0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (899 aa)
	A0A067G846	Uncharacterized protein. (916 aa)
	A0A067G493	TF-B3 domain-containing protein. (343 aa)
	A0A067G2H0	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (1020 aa)
	A0A067G123	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (374 aa)
	A0A067G0W3	Uncharacterized protein. (420 aa)
	A0A067FW19	Uncharacterized protein. (100 aa)
	A0A067FRT4	Uncharacterized protein. (378 aa)
	A0A067FKW8	Uncharacterized protein. (890 aa)
	A0A067FJQ5	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (928 aa)
	A0A067FGG4	TF-B3 domain-containing protein. (241 aa)
	A0A067FFL5	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (989 aa)
	A0A067FES8	TF-B3 domain-containing protein. (721 aa)
	A0A067F891	Uncharacterized protein. (354 aa)
	A0A067F6V9	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (463 aa)
	A0A067F6V7	Uncharacterized protein. (305 aa)
	A0A067F543	Uncharacterized protein. (350 aa)
	A0A067F0P8	Uncharacterized protein. (111 aa)
	A0A067EZW2	Uncharacterized protein. (155 aa)
	A0A067EX03	TF-B3 domain-containing protein. (127 aa)
	A0A067EVH8	TF-B3 domain-containing protein. (214 aa)
	A0A067ETX4	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (811 aa)
	A0A067ESG3	TF-B3 domain-containing protein. (116 aa)
	A0A067ER32	Uncharacterized protein. (283 aa)
	A0A067EMQ9	Uncharacterized protein. (385 aa)
	A0A067EMQ5	Uncharacterized protein. (309 aa)
	A0A067EMN2	Uncharacterized protein. (332 aa)
	A0A067EML3	Uncharacterized protein. (349 aa)
	A0A067ELU7	TF-B3 domain-containing protein. (243 aa)
	A0A067EKY7	TF-B3 domain-containing protein. (127 aa)
	A0A067EKN7	TF-B3 domain-containing protein. (127 aa)
	A0A067EGL8	Uncharacterized protein. (205 aa)
	A0A067EFV6	TF-B3 domain-containing protein. (233 aa)
	A0A067EFT3	Uncharacterized protein. (149 aa)
	A0A067EE89	TF-B3 domain-containing protein. (180 aa)
	A0A067EE47	Uncharacterized protein. (321 aa)
	A0A067EDH6	Uncharacterized protein. (241 aa)
	A0A067EDE4	Uncharacterized protein. (148 aa)
	ARF	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (730 aa)
	A0A067EAX0	Uncharacterized protein. (335 aa)
	A0A067EAR6	Uncharacterized protein. (210 aa)
	A0A067EAJ2	Uncharacterized protein. (375 aa)
	A0A067EAH5	TF-B3 domain-containing protein. (241 aa)
	A0A067E806	TF-B3 domain-containing protein. (300 aa)
	A0A067E7B8	Uncharacterized protein. (110 aa)
	A0A067E5U4	Uncharacterized protein. (283 aa)
	A0A067E2E3	TF-B3 domain-containing protein. (156 aa)
	A0A067E1Y9	Uncharacterized protein. (141 aa)
	A0A067E1J7	Uncharacterized protein. (311 aa)
	A0A067DXX5	Uncharacterized protein. (260 aa)
	A0A067DV39	TF-B3 domain-containing protein. (475 aa)
	A0A067DTV8	TF-B3 domain-containing protein. (307 aa)
	A0A067DTA1	Uncharacterized protein. (359 aa)
	A0A067DT50	Uncharacterized protein. (404 aa)
	A0A067DQ58	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). (715 aa)
	A0A067DLM8	TF-B3 domain-containing protein. (180 aa)
	A0A067DIG4	TF-B3 domain-containing protein. (251 aa)
	A0A067DHW7	TF-B3 domain-containing protein. (399 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A067DHW7	A0A067FFL5	A0A067DHW7	A0A067FFL5	TF-B3 domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.465
A0A067DV39	A0A067FFL5	A0A067DV39	A0A067FFL5	TF-B3 domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.435
A0A067E806	A0A067EMQ9	A0A067E806	A0A067EMQ9	TF-B3 domain-containing protein.	Uncharacterized protein.	0.416
A0A067EMQ9	A0A067E806	A0A067EMQ9	A0A067E806	Uncharacterized protein.	TF-B3 domain-containing protein.	0.416
A0A067FES8	ARF	A0A067FES8	A0A067EBP0	TF-B3 domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.536
A0A067FFL5	A0A067DHW7	A0A067FFL5	A0A067DHW7	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	TF-B3 domain-containing protein.	0.465
A0A067FFL5	A0A067DV39	A0A067FFL5	A0A067DV39	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	TF-B3 domain-containing protein.	0.435
A0A067FFL5	A0A067GI12	A0A067FFL5	A0A067GI12	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	TF-B3 domain-containing protein.	0.469
A0A067GI12	A0A067FFL5	A0A067GI12	A0A067FFL5	TF-B3 domain-containing protein.	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	0.469
ARF	A0A067FES8	A0A067EBP0	A0A067FES8	Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).	TF-B3 domain-containing protein.	0.536