(58 nodes) (2022) Comparative Biochemical and Transcriptomic Analyses Provide New Insights into Phytoplasma Infection Responses in Cucumber. network (Citrus sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067D302	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (524 aa)
	A0A067D6T3	Methyltransf_2 domain-containing protein. (99 aa)
	A0A067D9W9	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (269 aa)
	A0A067DDR4	Uncharacterized protein; Belongs to the multicopper oxidase family. (487 aa)
	A0A067DDZ2	Epimerase domain-containing protein. (178 aa)
	A0A067DE30	Cytokin-bind domain-containing protein. (145 aa)
	A0A067DGQ6	AMP-binding domain-containing protein. (174 aa)
	A0A067DHR8	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (352 aa)
	A0A067DP15	Methyltransf_2 domain-containing protein. (121 aa)
	A0A067DP32	FAD-binding PCMH-type domain-containing protein. (482 aa)
	A0A067DRP2	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (369 aa)
	A0A067DTN3	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (366 aa)
	A0A067DU39	Uncharacterized protein. (544 aa)
	A0A067DUV8	Methyltransf_2 domain-containing protein. (114 aa)
	A0A067DV83	Methyltransf_2 domain-containing protein. (184 aa)
	A0A067DWR9	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (244 aa)
	A0A067E1I5	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (210 aa)
	A0A067E1S5	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (579 aa)
	A0A067E4F2	Plastocyanin-like domain-containing protein. (175 aa)
	A0A067E658	FAD-binding PCMH-type domain-containing protein. (525 aa)
	A0A067EA18	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (562 aa)
	A0A067EBE7	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (578 aa)
	A0A067EBX9	Uncharacterized protein. (493 aa)
	A0A067EJ05	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (578 aa)
	A0A067EKC4	DNA polymerase. (614 aa)
	A0A067EMA2	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (578 aa)
	A0A067EMZ7	AMP-binding domain-containing protein. (480 aa)
	A0A067EPW7	Uncharacterized protein. (506 aa)
	A0A067ES60	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (568 aa)
	A0A067ETS6	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (319 aa)
	A0A067EVQ5	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (566 aa)
	A0A067EVR0	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (569 aa)
	A0A067EYT1	AMP-binding domain-containing protein. (340 aa)
	A0A067F2M6	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (254 aa)
	A0A067F3F0	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (242 aa)
	A0A067F5Q0	Uncharacterized protein. (560 aa)
	A0A067F6K2	F-box domain-containing protein. (645 aa)
	A0A067F9W1	AMP-binding domain-containing protein. (236 aa)
	A0A067FAN1	AMP-binding domain-containing protein. (436 aa)
	A0A067FHN7	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (266 aa)
	A0A067FNZ7	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (553 aa)
	A0A067FUC0	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (564 aa)
	A0A067FUZ7	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (450 aa)
	A0A067G0F5	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (580 aa)
	A0A067G1Z2	FAD-binding PCMH-type domain-containing protein. (521 aa)
	A0A067G2E9	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (259 aa)
	A0A067GBE1	Uncharacterized protein; Belongs to the multicopper oxidase family. (392 aa)
	A0A067GBZ0	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (577 aa)
	A0A067GQ70	Uncharacterized protein. (348 aa)
	A0A067GUW4	DNA polymerase. (1517 aa)
	A0A067GV29	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (370 aa)
	A0A067GVV1	Uncharacterized protein; Belongs to the multicopper oxidase family. (412 aa)
	A0A067GXT3	Uncharacterized protein. (632 aa)
	A0A067H3D4	Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (571 aa)
	A0A067H6T5	FAD-binding PCMH-type domain-containing protein. (571 aa)
	A0A067HAM2	FAD-binding PCMH-type domain-containing protein. (527 aa)
	A0A067D0P8	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (221 aa)
	A0A067D233	Uncharacterized protein. (206 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067D0P8	A0A067D233	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	Uncharacterized protein.	0.733
A0A067D0P8	A0A067DDZ2	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	Epimerase domain-containing protein.	0.952
A0A067D0P8	A0A067DGQ6	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	AMP-binding domain-containing protein.	0.737
A0A067D0P8	A0A067DU39	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	Uncharacterized protein.	0.746
A0A067D0P8	A0A067DUV8	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	Methyltransf_2 domain-containing protein.	0.406
A0A067D0P8	A0A067EBX9	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	Uncharacterized protein.	0.736
A0A067D0P8	A0A067EMZ7	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	AMP-binding domain-containing protein.	0.736
A0A067D0P8	A0A067EYT1	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	AMP-binding domain-containing protein.	0.733
A0A067D0P8	A0A067F5Q0	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	Uncharacterized protein.	0.757
A0A067D0P8	A0A067F9W1	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	AMP-binding domain-containing protein.	0.733
A0A067D0P8	A0A067FAN1	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	AMP-binding domain-containing protein.	0.733
A0A067D0P8	A0A067GQ70	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	Uncharacterized protein.	0.736
A0A067D233	A0A067D0P8	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.733
A0A067D233	A0A067D6T3	Uncharacterized protein.	Methyltransf_2 domain-containing protein.	0.712
A0A067D233	A0A067D9W9	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.712
A0A067D233	A0A067DDZ2	Uncharacterized protein.	Epimerase domain-containing protein.	0.955
A0A067D233	A0A067DGQ6	Uncharacterized protein.	AMP-binding domain-containing protein.	0.609
A0A067D233	A0A067DHR8	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.650
A0A067D233	A0A067DP15	Uncharacterized protein.	Methyltransf_2 domain-containing protein.	0.650
A0A067D233	A0A067DRP2	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.712