(36 nodes) (2022) Physiological and transcriptome profiling revealed defense networks during Cladosporium fulvum and tomato interaction at the early stage. network (Citrus sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067EJ62	3-ketoacyl-CoA synthase. (522 aa)
	A0A067ESP4	3-ketoacyl-CoA synthase. (521 aa)
	A0A067ESP7	3-ketoacyl-CoA synthase. (507 aa)
	A0A067EYI2	3-ketoacyl-CoA synthase. (421 aa)
	A0A067F2C3	Uncharacterized protein; Belongs to the calmodulin family. (149 aa)
	A0A067F2P2	3-ketoacyl-CoA synthase. (511 aa)
	A0A067FBX3	Uncharacterized protein. (594 aa)
	C4H1	Uncharacterized protein; Belongs to the cytochrome P450 family. (456 aa)
	A0A067FIP8	Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. (329 aa)
	A0A067FKD9	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (357 aa)
	A0A067FNV9	3-ketoacyl-CoA synthase. (517 aa)
	A0A067FPF3	3-ketoacyl-CoA synthase. (466 aa)
	A0A067FRD2	3-ketoacyl-CoA synthase. (496 aa)
	A0A067FYX9	Uncharacterized protein. (210 aa)
	A0A067FZH2	Uncharacterized protein. (149 aa)
	A0A067G025	3-ketoacyl-CoA synthase. (465 aa)
	A0A067G4P6	3-ketoacyl-CoA synthase. (508 aa)
	A0A067GED0	3-ketoacyl-CoA synthase. (537 aa)
	A0A067GY90	3-ketoacyl-CoA synthase. (515 aa)
	A0A067GYF3	3-ketoacyl-CoA synthase. (547 aa)
	A0A067H678	Uncharacterized protein. (186 aa)
	A0A067HF27	3-ketoacyl-CoA synthase. (531 aa)
	A0A067H891	PEROXIDASE_4 domain-containing protein; Belongs to the peroxidase family. (201 aa)
	hsp90	Hsp90. (700 aa)
	A0A067D5D3	Uncharacterized protein; Belongs to the PAL/histidase family. (396 aa)
	A0A067DD50	EF-hand domain-containing protein. (81 aa)
	A0A067DDZ2	Epimerase domain-containing protein. (178 aa)
	A0A067DJ29	Uncharacterized protein. (40 aa)
	A0A067DND3	Uncharacterized protein. (401 aa)
	A0A067DQT6	Uncharacterized protein. (359 aa)
	C4H2	Uncharacterized protein. (310 aa)
	A0A067E5T0	Phenylalanine ammonia-lyase. (722 aa)
	A0A067E6M3	Phenylalanine ammonia-lyase. (718 aa)
	A0A067ECX7	3-ketoacyl-CoA synthase. (504 aa)
	A0A067EFI5	3-ketoacyl-CoA synthase. (491 aa)
	A0A067EHM7	Phenylalanine ammonia-lyase. (555 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A067D5D3	A0A067DDZ2	A0A067D5D3	A0A067DDZ2	Uncharacterized protein; Belongs to the PAL/histidase family.	Epimerase domain-containing protein.	0.662
A0A067D5D3	A0A067E5T0	A0A067D5D3	A0A067E5T0	Uncharacterized protein; Belongs to the PAL/histidase family.	Phenylalanine ammonia-lyase.	0.900
A0A067D5D3	A0A067E6M3	A0A067D5D3	A0A067E6M3	Uncharacterized protein; Belongs to the PAL/histidase family.	Phenylalanine ammonia-lyase.	0.900
A0A067D5D3	A0A067FKD9	A0A067D5D3	A0A067FKD9	Uncharacterized protein; Belongs to the PAL/histidase family.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.738
A0A067D5D3	C4H1	A0A067D5D3	A0A067FFM0	Uncharacterized protein; Belongs to the PAL/histidase family.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.942
A0A067D5D3	C4H2	A0A067D5D3	A0A067E1E7	Uncharacterized protein; Belongs to the PAL/histidase family.	Uncharacterized protein.	0.938
A0A067DD50	A0A067F2C3	A0A067DD50	A0A067F2C3	EF-hand domain-containing protein.	Uncharacterized protein; Belongs to the calmodulin family.	0.935
A0A067DD50	A0A067FYX9	A0A067DD50	A0A067FYX9	EF-hand domain-containing protein.	Uncharacterized protein.	0.935
A0A067DD50	A0A067FZH2	A0A067DD50	A0A067FZH2	EF-hand domain-containing protein.	Uncharacterized protein.	0.934
A0A067DD50	hsp90	A0A067DD50	H9NHJ9	EF-hand domain-containing protein.	Hsp90.	0.510
A0A067DDZ2	A0A067D5D3	A0A067DDZ2	A0A067D5D3	Epimerase domain-containing protein.	Uncharacterized protein; Belongs to the PAL/histidase family.	0.662
A0A067DDZ2	A0A067E5T0	A0A067DDZ2	A0A067E5T0	Epimerase domain-containing protein.	Phenylalanine ammonia-lyase.	0.662
A0A067DDZ2	A0A067E6M3	A0A067DDZ2	A0A067E6M3	Epimerase domain-containing protein.	Phenylalanine ammonia-lyase.	0.662
A0A067DDZ2	A0A067EHM7	A0A067DDZ2	A0A067EHM7	Epimerase domain-containing protein.	Phenylalanine ammonia-lyase.	0.662
A0A067DDZ2	C4H1	A0A067DDZ2	A0A067FFM0	Epimerase domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.936
A0A067DDZ2	C4H2	A0A067DDZ2	A0A067E1E7	Epimerase domain-containing protein.	Uncharacterized protein.	0.951
A0A067E5T0	A0A067D5D3	A0A067E5T0	A0A067D5D3	Phenylalanine ammonia-lyase.	Uncharacterized protein; Belongs to the PAL/histidase family.	0.900
A0A067E5T0	A0A067DDZ2	A0A067E5T0	A0A067DDZ2	Phenylalanine ammonia-lyase.	Epimerase domain-containing protein.	0.662
A0A067E5T0	A0A067E6M3	A0A067E5T0	A0A067E6M3	Phenylalanine ammonia-lyase.	Phenylalanine ammonia-lyase.	0.900
A0A067E5T0	A0A067FKD9	A0A067E5T0	A0A067FKD9	Phenylalanine ammonia-lyase.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.739