(46 nodes) Valine, leucine and isoleucine degradation network (Citrus sinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A067D6Z3	Uncharacterized protein. (220 aa)
	A0A067DBC6	Uncharacterized protein. (94 aa)
	A0A067DE22	Uncharacterized protein. (145 aa)
	A0A067DL37	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (462 aa)
	A0A067DM36	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (477 aa)
	A0A067E000	Aldedh domain-containing protein. (332 aa)
	A0A067E346	Uncharacterized protein. (264 aa)
	A0A067EDB1	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (396 aa)
	A0A067EEC3	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (543 aa)
	A0A067EED5	NAD_binding_2 domain-containing protein. (70 aa)
	A0A067EGB9	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (461 aa)
	A0A067EIA2	Thiolase_N domain-containing protein. (262 aa)
	A0A067EIK1	E1_dh domain-containing protein. (380 aa)
	A0A067EP94	AMP-binding domain-containing protein. (435 aa)
	A0A067ERX0	Pyruvate carboxyltransferase domain-containing protein. (249 aa)
	A0A067EU92	Transket_pyr domain-containing protein. (372 aa)
	A0A067EX65	Uncharacterized protein. (566 aa)
	A0A067EYG9	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (467 aa)
	A0A067F1S3	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (485 aa)
	A0A067F321	Aldedh domain-containing protein. (631 aa)
	A0A067F5K4	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (340 aa)
	A0A067F892	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase. (465 aa)
	A0A067FGQ9	Uncharacterized protein. (351 aa)
	A0A067FMQ9	Uncharacterized protein. (433 aa)
	A0A067FP20	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (278 aa)
	A0A067FP70	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (508 aa)
	A0A067FQW5	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (456 aa)
	A0A067FRR5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (374 aa)
	A0A067FVG9	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (406 aa)
	A0A067FWH9	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex. (513 aa)
	A0A067FWR9	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (337 aa)
	A0A067FXG0	Uncharacterized protein. (210 aa)
	A0A067FXK6	Dihydrolipoyl dehydrogenase. (507 aa)
	A0A067G0F8	Uncharacterized protein. (507 aa)
	A0A067G0R7	Uncharacterized protein. (415 aa)
	A0A067G682	Aldedh domain-containing protein. (361 aa)
	A0A067G6J3	3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family. (355 aa)
	A0A067GJJ2	Uncharacterized protein. (180 aa)
	A0A067GPG5	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (493 aa)
	A0A067GRS8	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (392 aa)
	A0A067GT25	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (414 aa)
	A0A067GUV5	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (546 aa)
	A0A067H0I3	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (380 aa)
	A0A067H100	Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family. (367 aa)
	A0A067H721	E1_dh domain-containing protein. (474 aa)
	A0A067HCM8	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family. (399 aa)

Your Current Organism:

Citrus sinensis

NCBI taxonomy Id: 2711
Other names: Citrus sinensis (L.) Osbeck, Citrus x sinensis, Valencia orange, apfelsine, naranja, navel orange, sweet orange

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A067D6Z3	A0A067DM36	Uncharacterized protein.	Uncharacterized protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.914
A0A067D6Z3	A0A067E000	Uncharacterized protein.	Aldedh domain-containing protein.	0.938
A0A067D6Z3	A0A067E346	Uncharacterized protein.	Uncharacterized protein.	0.914
A0A067D6Z3	A0A067EDB1	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.784
A0A067D6Z3	A0A067EEC3	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.690
A0A067D6Z3	A0A067EGB9	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.764
A0A067D6Z3	A0A067F1S3	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.690
A0A067D6Z3	A0A067F321	Uncharacterized protein.	Aldedh domain-containing protein.	0.937
A0A067D6Z3	A0A067F5K4	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.745
A0A067D6Z3	A0A067FP70	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.677
A0A067D6Z3	A0A067FQW5	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.686
A0A067D6Z3	A0A067FVG9	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.754
A0A067D6Z3	A0A067FWH9	Uncharacterized protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.815
A0A067D6Z3	A0A067G682	Uncharacterized protein.	Aldedh domain-containing protein.	0.690
A0A067D6Z3	A0A067GPG5	Uncharacterized protein.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.690
A0A067D6Z3	A0A067GUV5	Uncharacterized protein.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.686
A0A067D6Z3	A0A067H0I3	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.764
A0A067D6Z3	A0A067HCM8	Uncharacterized protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.745
A0A067DBC6	A0A067DE22	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A067DBC6	A0A067DL37	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.940