4 items (Aeropyrum pernix) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	etfA	Electron transfer flavoprotein alpha-subunit. (308 aa)
	etfA-2	Electron transfer flavoprotein alpha-subunit. (372 aa)
	etfB	Electron transfer flavoprotein beta-subunit. (266 aa)
	etfB-2	Electron transfer flavoprotein beta-subunit. (280 aa)

Your Current Organism:

Aeropyrum pernix

NCBI taxonomy Id: 272557
Other names: A. pernix K1, Aeropyrum pernix K1, Aeropyrum pernix str. K1, Aeropyrum pernix strain K1

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
etfA	etfB	APE_0135	APE_0134.1	Electron transfer flavoprotein alpha-subunit.	Electron transfer flavoprotein beta-subunit.	0.998
etfA	etfB-2	APE_0135	APE_2418.1	Electron transfer flavoprotein alpha-subunit.	Electron transfer flavoprotein beta-subunit.	0.997
etfA-2	etfB	APE_2419	APE_0134.1	Electron transfer flavoprotein alpha-subunit.	Electron transfer flavoprotein beta-subunit.	0.991
etfA-2	etfB-2	APE_2419	APE_2418.1	Electron transfer flavoprotein alpha-subunit.	Electron transfer flavoprotein beta-subunit.	0.999
etfB	etfA	APE_0134.1	APE_0135	Electron transfer flavoprotein beta-subunit.	Electron transfer flavoprotein alpha-subunit.	0.998
etfB	etfA-2	APE_0134.1	APE_2419	Electron transfer flavoprotein beta-subunit.	Electron transfer flavoprotein alpha-subunit.	0.991
etfB-2	etfA	APE_2418.1	APE_0135	Electron transfer flavoprotein beta-subunit.	Electron transfer flavoprotein alpha-subunit.	0.997
etfB-2	etfA-2	APE_2418.1	APE_2419	Electron transfer flavoprotein beta-subunit.	Electron transfer flavoprotein alpha-subunit.	0.999