STRINGSTRING
BPSS0405 BPSS0405 ugpQ ugpQ BPSL3066 BPSL3066
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
BPSS0405Glycerophosphoryl diester phosphodiesterase family protein; Similar to Mycobacterium tuberculosis hypothetical protein precursor rv2277c or mt2337 or mtcy339.33 SWALL:YM77_MYCTU (SWALL:Q50687) (301 aa) fasta scores: E(): 2.3e-38, 40.53% id in 301 aa, and to Yersinia pestis putative exported protein ypo3232 or y0958 SWALL:Q8ZBZ8 (EMBL:AJ414156) (315 aa) fasta scores: E(): 5.7e-29, 49.16% id in 299 aa. (310 aa)
ugpQSimilar to Escherichia coli glycerophosphoryl diester phosphodiesterase UgpQ or b3449 SWALL:UGPQ_ECOLI (SWALL:P10908) (247 aa) fasta scores: E(): 7.7e-54, 58.36% id in 245 aa. (253 aa)
BPSL3066Putative hydrolase; Similar to Pseudomonas aeruginosa hypothetical protein Pa4792 SWALL:Q9HV16 (EMBL:AE004892) (311 aa) fasta scores: E(): 2.8e-46, 49.02% id in 308 aa, and to Bacillus subtilis glycerophosphoryl diester phosphodiesterase GlpQ SWALL:GLPQ_BACSU (SWALL:P37965) (293 aa) fasta scores: E(): 0.00032, 30.82% id in 133 aa. (326 aa)
Your Current Organism:
Burkholderia pseudomallei
NCBI taxonomy Id: 272560
Other names: B. pseudomallei K96243, Burkholderia pseudomallei K96243, Burkholderia pseudomallei str. K96243, Burkholderia pseudomallei strain K96243
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