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pyrB pyrB pyrK pyrK pyrD pyrD pyrE pyrE guaA guaA CAJ67020.1 CAJ67020.1 purE purE purC purC purF purF purG purG purN purN purH purH purD purD purL purL PurC1 PurC1 ThrS_udk ThrS_udk CAJ67401.1 CAJ67401.1 CAJ67402.1 CAJ67402.1 fhs fhs fchA fchA folD folD metF metF gcvH gcvH PurH PurH pupG pupG pdp pdp purB purB pyrC pyrC NfnA NfnA aspB1 aspB1 gcvTPA gcvTPA gcvPB gcvPB ppnP ppnP guaD guaD add add ade ade pbuX pbuX pyrD1 pyrD1 CAJ68968.1 CAJ68968.1 CAJ68975.1 CAJ68975.1 CAJ68976.2 CAJ68976.2 PbuG PbuG xpt xpt guaB guaB cdd cdd CAJ69424.1 CAJ69424.1 uraA uraA pyrR pyrR hpt hpt AdeP AdeP glyA glyA apt apt glyA1 glyA1 CAJ70075.1 CAJ70075.1 pyrD2 pyrD2 CAJ70077.1 CAJ70077.1 hpt1 hpt1 upp upp carB1 carB1 carA carA carB2 carB2 carA1 carA1 pyrF pyrF MetH MetH purA purA
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
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pyrBAspartate carbamoyltransferase (Aspartate transcarbamylase) (ATCase); Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (306 aa)
pyrKDihydroorotate dehydrogenase electron transfer subunit. (230 aa)
pyrDDihydroorotate dehydrogenase catalytic subunit; Catalyzes the conversion of dihydroorotate to orotate with NAD(+) as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. (300 aa)
pyrEOrotate phosphoribosyltransferase (OPRT) (OPRTase); Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). (194 aa)
guaAFragment of conserved hypothetical protein,DUF111 family; Catalyzes the synthesis of GMP from XMP. (511 aa)
CAJ67020.1Putative membrane-associated nucleotidase; Belongs to the 5'-nucleotidase family. (463 aa)
purEPhosphoribosylaminoimidazole carboxylase catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). (158 aa)
purCPhosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family. (232 aa)
purFAmidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine. (455 aa)
purGPhosphoribosylformylglycinamidine cyclo-ligase; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: down-regulated in Spo0A mutant PMID:24568651. (358 aa)
purNPhosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. (197 aa)
purHBifunctional purine biosynthesis protein purH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase; IMP cyclohydrolase]. (510 aa)
purDPhosphoribosylamine--glycine ligase; Belongs to the GARS family. (416 aa)
purLPhosphoribosylformylglycinamidine synthase. (1268 aa)
PurC1Putative phosphoribosylaminoimidazole-succinocarboxamide synthetase; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: down-regulated in Spo0A mutant PMID:24568651. (226 aa)
ThrS_udkPutative uridine kinase; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: down-regulated in Spo0A mutant PMID:24568651. (555 aa)
CAJ67401.1Putative lipoprotein. (334 aa)
CAJ67402.1Putative lipoprotein. (370 aa)
fhsFormate--tetrahydrofolate ligase (Formyltetrahydrofolate synthetase) (FHS) (FTHFS). (558 aa)
fchAMethenyltetrahydrofolate cyclohydrolase (5,10-methenyltetrahydrofolate 5-hydrolase). (210 aa)
folDBifunctional protein folD [Includes: Methylenetetrahydrofolate dehydrogenase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. (287 aa)
metF5,10-methylenetetrahydrofolate reductase; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: down-regulated in Spo0A mutant PMID:24568651; Belongs to the methylenetetrahydrofolate reductase family. (293 aa)
gcvHGlycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (125 aa)
PurH5-aminoimidazole-4-carboxamide ribonucleotide transformylase. (391 aa)
pupGPurine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate. (270 aa)
pdpPyrimidine-nucleoside phosphorylase; Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: down-regulated in Spo0A mutant PMID:24568651. (446 aa)
purBAdenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (481 aa)
pyrCDihydroorotase (DHOase); Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. (421 aa)
NfnAFerredoxin--NADP(+) reductase subunit alpha. (297 aa)
aspB1Putative glutamate synthase. (464 aa)
gcvTPABi-functional glycine dehydrogenase/aminomethyl transferase protein; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. N-terminal subunit subfamily. (824 aa)
gcvPBGlycine decarboxylase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. (485 aa)
ppnPUncharacterised protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (105 aa)
guaDGuanine deaminase (Guanase) (Guanine aminase) (Guanine aminohydrolase) (GAH). (423 aa)
addAdenosine deaminase (Adenosine aminohydrolase); Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily. (329 aa)
adeAdenine deaminase. (551 aa)
pbuXPutative xanthine permease. (452 aa)
pyrD1Dihydroorotate dehydrogenase, catalytic subunit. (361 aa)
CAJ68968.1D-hydantoinase (Dihydropyrimidinase). (456 aa)
CAJ68975.1Putative xanthine/uracile permease. (453 aa)
CAJ68976.2Putative xanthine/uracil permease. (449 aa)
PbuGXanthine/uracil/thiamine/ascorbate permease family protein. (458 aa)
xptXanthine phosphoribosyltransferase (XPRTase); Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis. (190 aa)
guaBInositol-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPDH) (IMPD); Experimentally verified as part of mature spore proteome PMID:19542279. (499 aa)
cddCytidine deaminase (Cytidine aminohydrolase) (CDA); This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (133 aa)
CAJ69424.1Putative membrane-associated 5'-nucleotidase/phosphoesterase; Belongs to the 5'-nucleotidase family. (613 aa)
uraAABC-type transport system, uracil-specific permease. (403 aa)
pyrRBifunctional protein PyrR [Includes: Pyrimidine operon regulatory protein; Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine-dependent manner to specific sites on pyr mRNA. This disrupts an antiterminator hairpin in the RNA and favors formation of a downstream transcription terminator, leading to a reduced expression of downstream genes. Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. (177 aa)
hptHypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. (175 aa)
AdePPutative permease. (447 aa)
glyASerine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (414 aa)
aptAdenine phosphoribosyltransferase (APRT); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. (170 aa)
glyA1Serine hydroxymethyltransferase (Serine methylase) (SHMT); Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (418 aa)
CAJ70075.1D-hydantoinase (Dihydropyrimidinase). (463 aa)
pyrD2Dihydroorotate dehydrogenase, catalytic subunit. (369 aa)
CAJ70077.1Putative purine permease. (450 aa)
hpt1Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family. (179 aa)
uppUracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase); Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate. (209 aa)
carB1Carbamoyl-phosphate synthase large chain 1; Belongs to the CarB family. (1068 aa)
carACarbamoyl-phosphate synthase small chain; Experimentally verified as part of mature spore proteome PMID:19542279; Belongs to the CarA family. (349 aa)
carB2Carbamoyl-phosphate synthase large chain 2; Belongs to the CarB family. (1068 aa)
carA1Carbamoyl-phosphate synthase small chain; Experimentally verified as part of mature spore proteome PMID:19542279; Belongs to the CarA family. (347 aa)
pyrFOrotidine 5'-phosphate decarboxylase (OMP decarboxylase) (OMPDCase) (OMPdecase); Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. (238 aa)
MetHPutative homocysteine S-methyltransferase. (793 aa)
purAAdenylosuccinate synthetase (IMP--aspartate ligase) (AdSS) (AMPSase); Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. (429 aa)
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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