STRINGSTRING
CAJ70272.1 CAJ70272.1 sigB sigB sigH sigH fliA fliA CAJ67181.1 CAJ67181.1 CAJ67258.1 CAJ67258.1 CAJ67343.1 CAJ67343.1 tcdR tcdR csfT csfT sigF sigF CAJ67938.1 CAJ67938.1 sigK sigK sigA1 sigA1 sigA2 sigA2 csfV csfV CAJ68753.1 CAJ68753.1 csfU csfU CAJ68880.1 CAJ68880.1 CAJ69108.1 CAJ69108.1 sigG sigG sigE sigE CAJ69604.1 CAJ69604.1 rpoN rpoN CAJ70226.1 CAJ70226.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CAJ70272.1Putative conjugative transposon protein Tn916-like, CTn7-Orf3. (138 aa)
sigBRNA polymerase sigma-B factor (Sigma-37); Belongs to the sigma-70 factor family. (257 aa)
sigHRNA polymerase factor sigma-70. (220 aa)
fliARNA polymerase sigma-28factor for flagellar operon; Belongs to the sigma-70 factor family. (233 aa)
CAJ67181.1Putative RNA polymerase sigma factor Tn916-like,CTn1-Orf4. (142 aa)
CAJ67258.1Putative sigma factor Tn1549-like, CTn2-Orf31. (161 aa)
CAJ67343.1Putative RNA polymerase sigma factor Tn5397,CTn3-Orf7. (141 aa)
tcdRAlternative RNA polymerase sigma factors. (184 aa)
csfTExtracytoplasmic function (ECF) sigma factor csfT; PMID:21628514; Belongs to the sigma-70 factor family. ECF subfamily. (159 aa)
sigFRNA polymerase sigma-F factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (254 aa)
CAJ67938.1Putative RNA polymerase sigma factor Tn1549-like,CTn4-Orf31. (146 aa)
sigKSigma K; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (219 aa)
sigA1RNA polymerase sigma factor SigA1 (sigma-43); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (390 aa)
sigA2RNA polymerase sigma factor SigA2 (sigma-43); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (296 aa)
csfVExtracytoplasmic function (ECF) sigma factor csfV; PMID:21628514; Belongs to the sigma-70 factor family. ECF subfamily. (160 aa)
CAJ68753.1Putative sigma factor Tn1549-like, CTn5-Orf38. (136 aa)
csfUExtracytoplasmic function (ECF) sigma factor csfU; PMID:21628514; Belongs to the sigma-70 factor family. ECF subfamily. (171 aa)
CAJ68880.1Conserved hypothetical protein. (132 aa)
CAJ69108.1Putative extrachromosomal origin protein. (164 aa)
sigGRNA polymerase sigma-G factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (257 aa)
sigERNA polymerase sigma-E factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (240 aa)
CAJ69604.1Putative sporulation protein. (847 aa)
rpoNRNA polymerase sigma-54 factor. (448 aa)
CAJ70226.1Putative RNA polymerase sigma factor Tn916-like,CTn6-Orf5. (140 aa)
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.