STRINGSTRING
CAJ67231.1 CAJ67231.1 CAJ67247.2 CAJ67247.2 CAJ67456.2 CAJ67456.2 CAJ67457.1 CAJ67457.1 CAJ67752.1 CAJ67752.1 CAJ67968.1 CAJ67968.1 radC radC dnaG dnaG recQ recQ CAJ68719.1 CAJ68719.1 CAJ68737.2 CAJ68737.2 DgkA DgkA priA priA CAJ69834.1 CAJ69834.1 CAJ70044.1 CAJ70044.1 CAJ70090.1 CAJ70090.1 rnmV rnmV dnaD dnaD dnaI dnaI dnaC dnaC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CAJ67231.1Putative conjugative transposon protein Tn1549-like, CTn2-Orf3. (283 aa)
CAJ67247.2Putative nucleic acid-binding protein Tn1549-like, CTn2-Orf19. (219 aa)
CAJ67456.2Putative phage protein. (412 aa)
CAJ67457.1Putative replicative helicase DnaB-like. (433 aa)
CAJ67752.1Putative phage protein. (279 aa)
CAJ67968.1Putative conjugative transposon protein Tn1549-like, CTn4-Orf1. (324 aa)
radCDNA repair protein RadC homolog; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651; Belongs to the UPF0758 family. (235 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (596 aa)
recQATP-dependent DNA helicase. (827 aa)
CAJ68719.1Putative conjugative transposon protein Tn1549-like, CTn5-Orf3. (336 aa)
CAJ68737.2Putative single-strand DNA-binding protein Tn1549-like, CTn5-Orf22. (219 aa)
DgkAPutative diacylglycerol kinase; Experimentally verified as part of mature spore proteome PMID:19542279. (239 aa)
priAPrimosomal protein N' (ATP-dependent helicase priA) (Replication factor Y); Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (829 aa)
CAJ69834.1Putative phage replication protein. (316 aa)
CAJ70044.1Putative phage protein. (249 aa)
CAJ70090.1Putative phage-related protein. (308 aa)
rnmVPutative DNA-binding protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (176 aa)
dnaDDNA replication protein DnaD/DnaB. (352 aa)
dnaIHelicase loader ATPase, dnaI. (330 aa)
dnaCReplicative DNA helicase, dnaC; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (442 aa)
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
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