36 items (Clostridioides difficile) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CAJ69018.2	Putative signaling protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651. (603 aa)
	CAJ69129.1	Putative diguanylate kinase signaling protein. (391 aa)
	CAJ69269.1	Putative diguanylate cyclase signaling protein. (632 aa)
	CAJ69270.1	Putative diguanylate cyclase signaling protein. (613 aa)
	CAJ69642.1	Putative diguanylate kinase signaling protein. (516 aa)
	CAJ69549.1	Putative signaling protein. (759 aa)
	CAJ69641.1	Putative signaling protein. (900 aa)
	CAJ67025.1	Putative signaling protein. (744 aa)
	CAJ67356.1	Putative signaling protein. (1032 aa)
	CAJ67370.1	Putative CheY-like chemosensory protein. (319 aa)
	CD630_05830	Fragment of putative signaling protein precursor (N-terminal region). (409 aa)
	CAJ67416.1	Putative diguanylate kinase signaling protein. (392 aa)
	CAJ67540.2	Putative diguanylate kinase signaling protein. (832 aa)
	CAJ67582.1	Putative diguanylate kinase signaling protein. (1011 aa)
	CAJ67591.1	Putative diguanylate kinase signaling protein. (556 aa)
	CAJ67645.1	Putative signaling protein. (642 aa)
	CAJ67838.2	Two-component sensor histidine kinase. (1182 aa)
	CAJ67856.1	Two-component sensor histidine kinase. (537 aa)
	CAJ67869.1	Putative signaling protein. (282 aa)
	CAJ68039.1	Putative diguanylate kinase signaling protein. (572 aa)
	CAJ68284.1	Putative diguanylate kinase signaling protein. (577 aa)
	dccA	Diguanylate kinase signaling protein; PMID:22522894. (281 aa)
	CAJ68286.1	Putative diguanylate kinase signaling protein. (744 aa)
	CAJ68341.1	Putative signaling protein. (965 aa)
	pdcA	Diguanylate kinase signaling protein; PMID:22522894. (697 aa)
	CAJ68403.1	Putative signaling protein. (739 aa)
	CAJ68481.1	Putative diguanylate kinase signaling protein. (514 aa)
	CAJ69648.1	Putative signaling protein. (515 aa)
	CAJ69761.1	Putative signaling protein. (759 aa)
	CAJ69775.1	Putative diguanylate kinase signaling protein. (384 aa)
	CAJ69858.1	Putative signaling protein. (739 aa)
	CAJ70264.1	Putative diguanylate kinase signaling protein. (318 aa)
	CAJ70532.1	Putative signaling protein. (835 aa)
	CAJ68516.1	Putative signaling protein. (619 aa)
	CAJ68711.1	Two-component response regulator. (502 aa)
	CAJ68712.1	Two-component sensor histidine kinase. (1145 aa)

Your Current Organism:

Clostridioides difficile

NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAJ67025.1	CAJ67356.1	CD630_02040	CD630_05220	Putative signaling protein.	Putative signaling protein.	0.593
CAJ67025.1	CAJ67370.1	CD630_02040	CD630_05370	Putative signaling protein.	Putative CheY-like chemosensory protein.	0.654
CAJ67025.1	CAJ67416.1	CD630_02040	CD630_05840	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.799
CAJ67025.1	CAJ67540.2	CD630_02040	CD630_07070	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.820
CAJ67025.1	CAJ67582.1	CD630_02040	CD630_07480	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.624
CAJ67025.1	CAJ67591.1	CD630_02040	CD630_07570	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.612
CAJ67025.1	CAJ67645.1	CD630_02040	CD630_08110	Putative signaling protein.	Putative signaling protein.	0.616
CAJ67025.1	CAJ67838.2	CD630_02040	CD630_09970	Putative signaling protein.	Two-component sensor histidine kinase.	0.952
CAJ67025.1	CAJ67856.1	CD630_02040	CD630_10150	Putative signaling protein.	Two-component sensor histidine kinase.	0.893
CAJ67025.1	CAJ68039.1	CD630_02040	CD630_11850	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.813
CAJ67025.1	CAJ68284.1	CD630_02040	CD630_14190	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.917
CAJ67025.1	CAJ68286.1	CD630_02040	CD630_14210	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.758
CAJ67025.1	CAJ68341.1	CD630_02040	CD630_14760	Putative signaling protein.	Putative signaling protein.	0.606
CAJ67025.1	CAJ68403.1	CD630_02040	CD630_15380	Putative signaling protein.	Putative signaling protein.	0.580
CAJ67025.1	CAJ68481.1	CD630_02040	CD630_16160	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.526
CAJ67025.1	CAJ68516.1	CD630_02040	CD630_16510	Putative signaling protein.	Putative signaling protein.	0.565
CAJ67025.1	CAJ68711.1	CD630_02040	CD630_18400	Putative signaling protein.	Two-component response regulator.	0.530
CAJ67025.1	CAJ68712.1	CD630_02040	CD630_18410	Putative signaling protein.	Two-component sensor histidine kinase.	0.617
CAJ67025.1	CAJ69018.2	CD630_02040	CD630_21340	Putative signaling protein.	Putative signaling protein; Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant PMID:24568651.	0.595
CAJ67025.1	CAJ69129.1	CD630_02040	CD630_22440	Putative signaling protein.	Putative diguanylate kinase signaling protein.	0.799

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