STRINGSTRING
plfB plfB pflD pflD hpdB hpdB pflD-2 pflD-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
plfBFormate acetyltransferase (Pyruvate formate-lyase); Experimentally verified through RNA-seq as part of Spo0A regulated transcriptome: up-regulated in Spo0A mutant. Experimentally verified through Mass Spectrometry as part of Spo0A regulated proteome: up-regulated in Spo0A mutant PMID:24568651. Experimentally verified as part of mature spore proteome PMID:19542279. (743 aa)
pflDFormate acetyltransferase (Pyruvate formate-lyase). (790 aa)
hpdBPutative 4-hydroxyphenylacetate decarboxylase,catalytic subunit HpdB; Decarboxylates phenylacetates with a hydroxyl group in the p- position. Active toward 4-hydroxyphenylacetate, 3,4- dihydroxyphenylacetate and p-hydroxymandelate, forming 4-methylphenol, 4-methylcatechol and p-hydroxybenzylalcohol respectively (By similarity); Belongs to the glycyl radical enzyme (GRE) family. HPAD subfamily. (902 aa)
pflD-2Pyruvate formate-lyase. (789 aa)
Your Current Organism:
Clostridioides difficile
NCBI taxonomy Id: 272563
Other names: C. difficile 630, Clostridioides difficile 630, Clostridium difficile 630, Clostridium difficile 630 (epidemic type X), Clostridium difficile str. 630, Clostridium difficile strain 630, Peptoclostridium difficile 630
Server load: low (24%) [HD]