Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CAJ68304.1 | rho | CD630_14390 | CD630_34870 | Putative transporter, LrgA family. | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | 0.654 |
| CAJ68304.1 | tcdB | CD630_14390 | CD630_06600 | Putative transporter, LrgA family. | Toxin B. | 0.611 |
| CAJ68304.1 | tcdC | CD630_14390 | CD630_06640 | Putative transporter, LrgA family. | Negative regulator of toxin gene expression. | 0.639 |
| CAJ68304.1 | tcdE | CD630_14390 | CD630_06610 | Putative transporter, LrgA family. | Holin-like pore-forming protein. | 0.612 |
| CAJ68304.1 | tcdR | CD630_14390 | CD630_06590 | Putative transporter, LrgA family. | Alternative RNA polymerase sigma factors. | 0.635 |
| agrB | agrD | CD630_27500 | CD630_27491 | Accessory gene regulator. | Autoinducer prepeptide. | 0.878 |
| agrB | cdtR | CD630_27500 | CD630_26030 | Accessory gene regulator. | Clostridium difficile binary toxin regulatory gene, LytTR family. | 0.460 |
| agrB | tcdB | CD630_27500 | CD630_06600 | Accessory gene regulator. | Toxin B. | 0.488 |
| agrB | tcdR | CD630_27500 | CD630_06590 | Accessory gene regulator. | Alternative RNA polymerase sigma factors. | 0.449 |
| agrD | agrB | CD630_27491 | CD630_27500 | Autoinducer prepeptide. | Accessory gene regulator. | 0.878 |
| cdtR | agrB | CD630_26030 | CD630_27500 | Clostridium difficile binary toxin regulatory gene, LytTR family. | Accessory gene regulator. | 0.460 |
| cdtR | tcdB | CD630_26030 | CD630_06600 | Clostridium difficile binary toxin regulatory gene, LytTR family. | Toxin B. | 0.620 |
| cdtR | tcdC | CD630_26030 | CD630_06640 | Clostridium difficile binary toxin regulatory gene, LytTR family. | Negative regulator of toxin gene expression. | 0.612 |
| cdtR | tcdE | CD630_26030 | CD630_06610 | Clostridium difficile binary toxin regulatory gene, LytTR family. | Holin-like pore-forming protein. | 0.611 |
| cdtR | tcdR | CD630_26030 | CD630_06590 | Clostridium difficile binary toxin regulatory gene, LytTR family. | Alternative RNA polymerase sigma factors. | 0.634 |
| rho | CAJ68304.1 | CD630_34870 | CD630_14390 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Putative transporter, LrgA family. | 0.654 |
| rho | tcdB | CD630_34870 | CD630_06600 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Toxin B. | 0.681 |
| rho | tcdC | CD630_34870 | CD630_06640 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Negative regulator of toxin gene expression. | 0.591 |
| rho | tcdE | CD630_34870 | CD630_06610 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Holin-like pore-forming protein. | 0.597 |
| rho | tcdR | CD630_34870 | CD630_06590 | Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. | Alternative RNA polymerase sigma factors. | 0.627 |
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