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GDI3484 GDI3484 nudH nudH deaD-3 deaD-3 deaD-2 deaD-2 GDI3025 GDI3025 rhlE rhlE GDI2830 GDI2830 groL-2 groL-2 GDI2366 GDI2366 rne rne NrfA NrfA GDI2218 GDI2218 GDI2159 GDI2159 rnd-2 rnd-2 groL groL dnaK-2 dnaK-2 pnp pnp GDI1437 GDI1437 recQ recQ GDI1903 GDI1903 eno eno ppk ppk GDI2029 GDI2029 deaD deaD dnaK dnaK rnd rnd topA topA rnr rnr rho rho GDI3698 GDI3698 GDI3355 GDI3355
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
GDI3484Polyphosphate kinase. (303 aa)
nudHPutative (di)nucleoside polyphosphate hydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (167 aa)
deaD-3Putative cold-shock DEAD box protein A; Belongs to the DEAD box helicase family. (423 aa)
deaD-2Cold-shock DEAD box protein A homolog; Belongs to the DEAD box helicase family. (483 aa)
GDI3025RNA-metabolising metallo-beta-lactamase protein. (550 aa)
rhlEPutative ATP-dependent RNA helicase rhlE; Belongs to the DEAD box helicase family. (390 aa)
GDI2830Hypothetical protein. (199 aa)
groL-260 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (541 aa)
GDI2366Cobalamin synthesis protein. (340 aa)
rnePutative ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (1036 aa)
NrfAPutative protein NrfA (Nif-regulating factor); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. (98 aa)
GDI2218ATP-dependent RNA helicase. (821 aa)
GDI2159Conserved hypothetical protein. (210 aa)
rnd-2Putative ribonuclease D. (210 aa)
groL60 kDa chaperonin; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. (547 aa)
dnaK-2Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. (638 aa)
pnpPutative polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (712 aa)
GDI1437Putative ribonuclease. (363 aa)
recQPutative ATP-dependent DNA helicase recQ. (622 aa)
GDI1903Putative phosphoribosyltransferase. (276 aa)
enoEnolase protein; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (426 aa)
ppkPutative polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (764 aa)
GDI2029Putative helicase. (890 aa)
deaDPutative cold-shock DEAD box protein A; Belongs to the DEAD box helicase family. (596 aa)
dnaKPutative chaperone protein dnaK. (440 aa)
rndPutative Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. (393 aa)
topADNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (924 aa)
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (781 aa)
rhoTranscription termination factor rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (435 aa)
GDI3698Putative ATP-dependent RNA helicase. (429 aa)
GDI3355Putative tRNA nucleotidyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (427 aa)
Your Current Organism:
Gluconacetobacter diazotrophicus
NCBI taxonomy Id: 272568
Other names: G. diazotrophicus PA1 5, Gluconacetobacter diazotrophicus ATCC 49037, Gluconacetobacter diazotrophicus BR 11281, Gluconacetobacter diazotrophicus CCUG 37298, Gluconacetobacter diazotrophicus CIP 103539, Gluconacetobacter diazotrophicus DSM 5601, Gluconacetobacter diazotrophicus LMG 7603, Gluconacetobacter diazotrophicus NCCB 89154, Gluconacetobacter diazotrophicus PA1 5, Gluconacetobacter diazotrophicus str. PA1 5, Gluconacetobacter diazotrophicus strain PA1 5
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