STRINGSTRING
rps17E rps17E rps4P rps4P rpl18E rpl18E rpl13P rpl13P rps2P rps2P rpl24E rpl24E rpl21E rpl21E rpl11P rpl11P rpl10E rpl10E rpL12P rpL12P rps3AE rps3AE rpl15P rpl15P rps5P rps5P rpl18P rpl18P rpl6P rpl6P rps8P rps8P rpl5P rpl5P rps4E rps4E rpl29P rpl29P rpl22P rpl22P rpl23P rpl23P rpl37AE rpl37AE eif5A eif5A rpl15E rpl15E rps6E rps6E rpl10E-2 rpl10E-2 rps7P rps7P rps12P rps12P rps24E rps24E rpl40E rpl40E rps19E rps19E rpl44E rpl44E
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps17E30S ribosomal protein S17e; Belongs to the eukaryotic ribosomal protein eS17 family. (63 aa)
rps4P30S ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (171 aa)
rpl18E50S ribosomal protein L18e; Stabilizes the tertiary rRNA structure within the 23S rRNA domain (domain II) to which it binds; Belongs to the eukaryotic ribosomal protein eL18 family. (116 aa)
rpl13P50S ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit (By similarity). Binds to 23S rRNA. (145 aa)
rps2P30S ribosomal protein S2P. (267 aa)
rpl24E50S ribosomal protein L24e; Binds to the 23S rRNA. (116 aa)
rpl21E50S ribosomal protein L21e; This is one of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains. (96 aa)
rpl11P50S ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (162 aa)
rpl10E50S ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. (348 aa)
rpL12P50S ribosomal protein L12P; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
rps3AE30S ribosomal protein S3Ae; Belongs to the eukaryotic ribosomal protein eS1 family. (213 aa)
rpl15P50S ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (165 aa)
rps5P30S ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. (212 aa)
rpl18P50S ribosomal protein L18P; This is one of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, where it forms part of the central protuberance and stabilizes the orientation of adjacent RNA domains. (187 aa)
rpl6P50S ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (178 aa)
rps8P30S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl5P50S ribosomal protein L5P; This is 1 of 5 proteins that mediates the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains. Forms part of the central protuberance. Modeling places the A and P site tRNAs in close proximity to this protein; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. In the 70S ribosome it is thought to contact protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. (177 aa)
rps4E30S ribosomal protein S4e; Belongs to the eukaryotic ribosomal protein eS4 family. (234 aa)
rpl29P50S ribosomal protein L29P; Stabilizes the tertiary rRNA structure within the 23S rRNA domain (domain I) to which it binds. Located at the polypeptide exit tunnel on the outside of the subunit; Belongs to the universal ribosomal protein uL29 family. (71 aa)
rpl22P50S ribosomal protein L22P; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (155 aa)
rpl23P50S ribosomal protein L23P; Binds to a specific region on the 23S rRNA. Located at the polypeptide exit tunnel on the outside of the subunit; Belongs to the universal ribosomal protein uL23 family. (85 aa)
rpl37AE50S ribosomal protein L37ae; Binds to the 23S rRNA. (116 aa)
eif5ATranslation initiation factor 5A; Functions by promoting the formation of the first peptide bond; Belongs to the eIF-5A family. (126 aa)
rpl15E50S ribosomal protein L15e. (196 aa)
rps6E30S ribosomal protein S6e; Belongs to the eukaryotic ribosomal protein eS6 family. (129 aa)
rpl10E-250S ribosomal protein L10e; This is 1 of 5 proteins that mediate the attachment of the 5S rRNA onto the large ribosomal subunit, stabilizing the orientation of adjacent RNA domains. Modeling places the A and P site tRNAs in close proximity to this protein. (177 aa)
rps7P30S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (206 aa)
rps12P30S ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (142 aa)
rps24E30S ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family. (102 aa)
rpl40E50S ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (49 aa)
rps19E30S ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (153 aa)
rpl44E50S ribosomal protein L44E; Binds to the 23S rRNA. Binds deacetylated tRNA in the E site; when the tRNA binds a stretch of 7 amino acids are displaced to allow binding. (92 aa)
Your Current Organism:
Haloarcula marismortui
NCBI taxonomy Id: 272569
Other names: H. marismortui ATCC 43049, Haloarcula marismortui ATCC 43049, Haloarcula marismortui str. ATCC 43049, Haloarcula marismortui strain ATCC 43049
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.