Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| djlA | erpA | lpg2341 | lpg1388 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.843 |
| djlA | iscS | lpg2341 | lpg1746 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Cysteine desulfurase NifS. | 0.848 |
| djlA | lpg0600 | lpg2341 | lpg0600 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Rrf2 family protein. | 0.402 |
| djlA | lpg0605 | lpg2341 | lpg0605 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | Nitrogen fixation protein (Fe-S cluster formation) NifU. | 0.986 |
| djlA | lpg1745 | lpg2341 | lpg1745 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | NifU family iron binding protein, [Fe-S] cluster formation/repair protein IscU, HesB. | 0.986 |
| djlA | ydiC | lpg2341 | lpg1744 | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | HesB family protein; Belongs to the HesB/IscA family. | 0.843 |
| erpA | djlA | lpg1388 | lpg2341 | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.843 |
| erpA | iscS | lpg1388 | lpg1746 | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | Cysteine desulfurase NifS. | 0.808 |
| erpA | lpg0602 | lpg1388 | lpg0602 | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | ATP transporter, ABC binding component, ATP-binding protein. | 0.534 |
| erpA | lpg0603 | lpg1388 | lpg0603 | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | ABC transporter, permease component. | 0.545 |
| erpA | lpg0605 | lpg1388 | lpg0605 | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | Nitrogen fixation protein (Fe-S cluster formation) NifU. | 0.793 |
| erpA | lpg1745 | lpg1388 | lpg1745 | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | NifU family iron binding protein, [Fe-S] cluster formation/repair protein IscU, HesB. | 0.767 |
| erpA | ycf24 | lpg1388 | lpg0601 | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | ABC transporter, permease. | 0.543 |
| iscS | djlA | lpg1746 | lpg2341 | Cysteine desulfurase NifS. | DNA binding protein DnaJ, heat shock protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.848 |
| iscS | erpA | lpg1746 | lpg1388 | Cysteine desulfurase NifS. | Hypothetical protein; Required for insertion of 4Fe-4S clusters for at least IspG. | 0.808 |
| iscS | lpg0600 | lpg1746 | lpg0600 | Cysteine desulfurase NifS. | Rrf2 family protein. | 0.982 |
| iscS | lpg0604 | lpg1746 | lpg0604 | Cysteine desulfurase NifS. | Aminotransferase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | 0.654 |
| iscS | lpg0605 | lpg1746 | lpg0605 | Cysteine desulfurase NifS. | Nitrogen fixation protein (Fe-S cluster formation) NifU. | 0.999 |
| iscS | lpg1745 | lpg1746 | lpg1745 | Cysteine desulfurase NifS. | NifU family iron binding protein, [Fe-S] cluster formation/repair protein IscU, HesB. | 0.999 |
| iscS | ycf24 | lpg1746 | lpg0601 | Cysteine desulfurase NifS. | ABC transporter, permease. | 0.629 |
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