Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| csrA | lpg1912 | lpg2094 | lpg1912 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Sensory box histidine kinase/response regulator. | 0.407 |
| csrA | lvrC | lpg2094 | lpg1257 | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | LvrC; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.630 |
| csrA-2 | lpg1912 | lpg0781 | lpg1912 | Global regulator (carbon storage regulator); A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Sensory box histidine kinase/response regulator. | 0.407 |
| feoA | np20 | lpg2658 | lpg0232 | Ferrous iron transporter A. | Transcriptional regulator np20, Fur family; Belongs to the Fur family. | 0.603 |
| fis | lpg1912 | lpg0542 | lpg1912 | DNA binding protein Fis; Belongs to the transcriptional regulatory Fis family. | Sensory box histidine kinase/response regulator. | 0.450 |
| fis-2 | lpg1912 | lpg1370 | lpg1912 | Hypothetical protein; Transcription factors / DNA binding proteins, Replication and Repair; Belongs to the transcriptional regulatory Fis family. | Sensory box histidine kinase/response regulator. | 0.444 |
| fis-3 | lpg1912 | lpg1743 | lpg1912 | Fis transcriptional activator; Belongs to the transcriptional regulatory Fis family. | Sensory box histidine kinase/response regulator. | 0.450 |
| fleQ | lpg1912 | lpg0853 | lpg1912 | Transcriptional regulator FleQ. | Sensory box histidine kinase/response regulator. | 0.865 |
| hpd | np20 | lpg2278 | lpg0232 | 4-hydroxyphenylpyruvate dioxygenase; Catalyzes the transformation of p-hydroxyphenylpyruvate into HGA. Has hemolytic and brown pigment production activity. | Transcriptional regulator np20, Fur family; Belongs to the Fur family. | 0.433 |
| lpg1912 | csrA | lpg1912 | lpg2094 | Sensory box histidine kinase/response regulator. | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.407 |
| lpg1912 | csrA-2 | lpg1912 | lpg0781 | Sensory box histidine kinase/response regulator. | Global regulator (carbon storage regulator); A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.407 |
| lpg1912 | fis | lpg1912 | lpg0542 | Sensory box histidine kinase/response regulator. | DNA binding protein Fis; Belongs to the transcriptional regulatory Fis family. | 0.450 |
| lpg1912 | fis-2 | lpg1912 | lpg1370 | Sensory box histidine kinase/response regulator. | Hypothetical protein; Transcription factors / DNA binding proteins, Replication and Repair; Belongs to the transcriptional regulatory Fis family. | 0.444 |
| lpg1912 | fis-3 | lpg1912 | lpg1743 | Sensory box histidine kinase/response regulator. | Fis transcriptional activator; Belongs to the transcriptional regulatory Fis family. | 0.450 |
| lpg1912 | fleQ | lpg1912 | lpg0853 | Sensory box histidine kinase/response regulator. | Transcriptional regulator FleQ. | 0.865 |
| lpg1912 | lvrC | lpg1912 | lpg1257 | Sensory box histidine kinase/response regulator. | LvrC; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.407 |
| lpg1912 | np20 | lpg1912 | lpg0232 | Sensory box histidine kinase/response regulator. | Transcriptional regulator np20, Fur family; Belongs to the Fur family. | 0.521 |
| lpg1912 | rpoD | lpg1912 | lpg2361 | Sensory box histidine kinase/response regulator. | RNA polymerase sigma 70 factor (RpoD); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.455 |
| lvrC | csrA | lpg1257 | lpg2094 | LvrC; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Carbon storage regulator RsmA; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | 0.630 |
| lvrC | lpg1912 | lpg1257 | lpg1912 | LvrC; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). | Sensory box histidine kinase/response regulator. | 0.407 |
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