(13 nodes) Mixed, incl. PspC domain, and Transcription regulator LuxR, C-terminal network (Listeria innocua)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lin0953	Lin0953 protein. (104 aa)
	lin0954	Lin0954 protein. (281 aa)
	lin1019	Lin1019 protein; Similar to B. subtilis YvqF protein. (237 aa)
	lin1020	Similar to two-component sensor histidine kinase in particular B. subtilis YvqE protein. (352 aa)
	lin1021	Lin1021 protein; Similar to two-component response regulator, in particular B. subtilis YvqC protein. (212 aa)
	lin1468	Similar to unknown proteins. (186 aa)
	lin1676	Similar to unknown proteins. (142 aa)
	lin1677	Lin1677 protein; Similar to similar to ABC transporter (ATP-binding protein). (306 aa)
	lin1678	Similar to membrane proteins. (355 aa)
	lin2627	Lin2627 protein; Similar to B. subtilis YvlD protein. (117 aa)
	lin2628	Lin2628 protein; Similar to B. subtilis yvlC protein. (66 aa)
	lin2629	Lin2629 protein. (403 aa)
	lin2630	Lin2630 protein; Similar to B. subtilis YvlB protein. (416 aa)

Your Current Organism:

Listeria innocua

NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
lin0953	lin0954	gene:17565283	gene:17565284	Lin0953 protein.	Lin0954 protein.	0.906
lin0953	lin1019	gene:17565283	gene:17565349	Lin0953 protein.	Lin1019 protein; Similar to B. subtilis YvqF protein.	0.637
lin0953	lin1020	gene:17565283	gene:17565350	Lin0953 protein.	Similar to two-component sensor histidine kinase in particular B. subtilis YvqE protein.	0.638
lin0953	lin1677	gene:17565283	gene:17566008	Lin0953 protein.	Lin1677 protein; Similar to similar to ABC transporter (ATP-binding protein).	0.638
lin0953	lin1678	gene:17565283	gene:17566009	Lin0953 protein.	Similar to membrane proteins.	0.635
lin0953	lin2627	gene:17565283	gene:17567008	Lin0953 protein.	Lin2627 protein; Similar to B. subtilis YvlD protein.	0.457
lin0953	lin2628	gene:17565283	gene:17567009	Lin0953 protein.	Lin2628 protein; Similar to B. subtilis yvlC protein.	0.653
lin0953	lin2629	gene:17565283	gene:17567010	Lin0953 protein.	Lin2629 protein.	0.638
lin0953	lin2630	gene:17565283	gene:17567011	Lin0953 protein.	Lin2630 protein; Similar to B. subtilis YvlB protein.	0.650
lin0954	lin0953	gene:17565284	gene:17565283	Lin0954 protein.	Lin0953 protein.	0.906
lin0954	lin1019	gene:17565284	gene:17565349	Lin0954 protein.	Lin1019 protein; Similar to B. subtilis YvqF protein.	0.810
lin0954	lin1020	gene:17565284	gene:17565350	Lin0954 protein.	Similar to two-component sensor histidine kinase in particular B. subtilis YvqE protein.	0.687
lin0954	lin1677	gene:17565284	gene:17566008	Lin0954 protein.	Lin1677 protein; Similar to similar to ABC transporter (ATP-binding protein).	0.637
lin0954	lin2628	gene:17565284	gene:17567009	Lin0954 protein.	Lin2628 protein; Similar to B. subtilis yvlC protein.	0.978
lin0954	lin2629	gene:17565284	gene:17567010	Lin0954 protein.	Lin2629 protein.	0.844
lin0954	lin2630	gene:17565284	gene:17567011	Lin0954 protein.	Lin2630 protein; Similar to B. subtilis YvlB protein.	0.783
lin1019	lin0953	gene:17565349	gene:17565283	Lin1019 protein; Similar to B. subtilis YvqF protein.	Lin0953 protein.	0.637
lin1019	lin0954	gene:17565349	gene:17565284	Lin1019 protein; Similar to B. subtilis YvqF protein.	Lin0954 protein.	0.810
lin1019	lin1020	gene:17565349	gene:17565350	Lin1019 protein; Similar to B. subtilis YvqF protein.	Similar to two-component sensor histidine kinase in particular B. subtilis YvqE protein.	0.985
lin1019	lin1021	gene:17565349	gene:17565351	Lin1019 protein; Similar to B. subtilis YvqF protein.	Lin1021 protein; Similar to two-component response regulator, in particular B. subtilis YvqC protein.	0.954