23 items (Listeria innocua) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	lin0300	Lin0300 protein. (221 aa)
	lin0301	C-terminal part similar to B. subtilis ComEC protein. (280 aa)
	lin0944	Lin0944 protein; Similar to C-terminal part of B. subtilis ComEC protein and to ComEA. (376 aa)
	lin0945	Lin0945 protein. (75 aa)
	lin1225	Lin1225 protein. (154 aa)
	lin1226	Lin1226 protein. (306 aa)
	lin1313	Lin1313 protein; Similar to polypeptide deformylase, similar to B. subtilis Smf protein. (286 aa)
	lin1373	Similar to 5-formyltetrahydrofolate cyclo-ligase. (179 aa)
	lin1374	Lin1374 protein; Similar to B. subtilis yqgP. (512 aa)
	lin1375	Lin1375 protein; Similar to B. subtilis yqgQ. (70 aa)
	lin1378	Lin1378 protein; Weakly similar to B. subtilis comG operon protein 7 (comGG). (105 aa)
	lin1379	Lin1379 protein; Similar to B. subtilis comG operon protein 6. (154 aa)
	lin1380	Similar to comG operon protein 5 (comGE). (94 aa)
	lin1381	Similar to comG operon protein 4 (comGD). (140 aa)
	lin1382	ComG operon protein 3; Required for transformation and DNA binding. (107 aa)
	comGB	ComGB protein; Similar to B. subtilis comG operon protein 2. (343 aa)
	comGA	ComGA protein; Similar to B. subtilis comG operon protein 1. (340 aa)
	comEC	ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding. (746 aa)
	comEA	ComEA protein; Similar to integral membrane protein ComEA. (200 aa)
	lin1584	UPF0758 protein lin1584; Similar to DNA repair protein RadC; Belongs to the UPF0758 family. (224 aa)
	comC	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase). (236 aa)
	comFC	ComFC protein; Similar to late competence protein comFC. (218 aa)
	comFA	ComFA protein; Similar to late competence protein comFA. (439 aa)

Your Current Organism:

Listeria innocua

NCBI taxonomy Id: 272626
Other names: L. innocua Clip11262, Listeria innocua Clip11262, Listeria innocua str. Clip11262, Listeria innocua strain Clip11262

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
comC	comEA	gene:17565916	gene:17565850	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	ComEA protein; Similar to integral membrane protein ComEA.	0.845
comC	comEC	gene:17565916	gene:17565848	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding.	0.759
comC	comFA	gene:17565916	gene:17567037	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	ComFA protein; Similar to late competence protein comFA.	0.786
comC	comGA	gene:17565916	gene:17565715	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	ComGA protein; Similar to B. subtilis comG operon protein 1.	0.924
comC	comGB	gene:17565916	gene:17565714	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	ComGB protein; Similar to B. subtilis comG operon protein 2.	0.927
comC	lin0301	gene:17565916	gene:17564628	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	C-terminal part similar to B. subtilis ComEC protein.	0.405
comC	lin0944	gene:17565916	gene:17565274	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	Lin0944 protein; Similar to C-terminal part of B. subtilis ComEC protein and to ComEA.	0.400
comC	lin1313	gene:17565916	gene:17565644	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	Lin1313 protein; Similar to polypeptide deformylase, similar to B. subtilis Smf protein.	0.764
comC	lin1379	gene:17565916	gene:17565710	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	Lin1379 protein; Similar to B. subtilis comG operon protein 6.	0.556
comC	lin1380	gene:17565916	gene:17565711	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	Similar to comG operon protein 5 (comGE).	0.547
comC	lin1381	gene:17565916	gene:17565712	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	Similar to comG operon protein 4 (comGD).	0.608
comC	lin1382	gene:17565916	gene:17565713	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	ComG operon protein 3; Required for transformation and DNA binding.	0.722
comC	lin1584	gene:17565916	gene:17565915	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	UPF0758 protein lin1584; Similar to DNA repair protein RadC; Belongs to the UPF0758 family.	0.828
comEA	comC	gene:17565850	gene:17565916	ComEA protein; Similar to integral membrane protein ComEA.	ComC protein; Similar to B. subtilis late competence protein ComC (type IV prepilin peptidase).	0.845
comEA	comEC	gene:17565850	gene:17565848	ComEA protein; Similar to integral membrane protein ComEA.	ComEC protein; Similar to putative integral membrane protein ComEC specifically required for DNA uptake but not for binding.	0.943
comEA	comFA	gene:17565850	gene:17567037	ComEA protein; Similar to integral membrane protein ComEA.	ComFA protein; Similar to late competence protein comFA.	0.883
comEA	comFC	gene:17565850	gene:17567036	ComEA protein; Similar to integral membrane protein ComEA.	ComFC protein; Similar to late competence protein comFC.	0.628
comEA	comGA	gene:17565850	gene:17565715	ComEA protein; Similar to integral membrane protein ComEA.	ComGA protein; Similar to B. subtilis comG operon protein 1.	0.861
comEA	comGB	gene:17565850	gene:17565714	ComEA protein; Similar to integral membrane protein ComEA.	ComGB protein; Similar to B. subtilis comG operon protein 2.	0.790
comEA	lin1313	gene:17565850	gene:17565644	ComEA protein; Similar to integral membrane protein ComEA.	Lin1313 protein; Similar to polypeptide deformylase, similar to B. subtilis Smf protein.	0.464