(5 nodes) Transcription, DNA-templated network (Mycoplasma pulmonis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	MYPU_1820	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination. (196 aa)
	MYPU_2030	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%. (550 aa)
	MYPU_5450	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1426 aa)
	MYPU_5460	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1216 aa)
	MYPU_5610	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (333 aa)

Your Current Organism:

Mycoplasma pulmonis

NCBI taxonomy Id: 272635
Other names: M. pulmonis UAB CTIP, Mycoplasma pulmonis UAB CTIP, Mycoplasma pulmonis str. UAB CTIP, Mycoplasma pulmonis strain UAB CTIP

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MYPU_1820	MYPU_2030	gene:17576767	gene:17576790	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	0.964
MYPU_1820	MYPU_5450	gene:17576767	gene:17577147	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.961
MYPU_1820	MYPU_5460	gene:17576767	gene:17577148	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
MYPU_1820	MYPU_5610	gene:17576767	gene:17577168	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.947
MYPU_2030	MYPU_1820	gene:17576790	gene:17576767	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	0.964
MYPU_2030	MYPU_5450	gene:17576790	gene:17577147	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
MYPU_2030	MYPU_5460	gene:17576790	gene:17577148	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
MYPU_2030	MYPU_5610	gene:17576790	gene:17577168	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
MYPU_5450	MYPU_1820	gene:17577147	gene:17576767	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	0.961
MYPU_5450	MYPU_2030	gene:17577147	gene:17576790	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	0.987
MYPU_5450	MYPU_5460	gene:17577147	gene:17577148	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MYPU_5450	MYPU_5610	gene:17577147	gene:17577168	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MYPU_5460	MYPU_1820	gene:17577148	gene:17576767	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	0.982
MYPU_5460	MYPU_2030	gene:17577148	gene:17576790	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	0.994
MYPU_5460	MYPU_5450	gene:17577148	gene:17577147	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MYPU_5460	MYPU_5610	gene:17577148	gene:17577168	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MYPU_5610	MYPU_1820	gene:17577168	gene:17576767	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	TRANSCRIPTION ANTITERMINATION PROTEIN; Participates in transcription elongation, termination and antitermination.	0.947
MYPU_5610	MYPU_2030	gene:17577168	gene:17576790	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	N-UTILIZATION SUBSTANCE PROTEIN A; Identified by sequence similarity; putative; similar to SWISS-PROT:P75591 (NUSA_MYCPN) Blastp2 P=2e-27 C=32%.	0.994
MYPU_5610	MYPU_5450	gene:17577168	gene:17577147	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-DIRECTED RNA POLYMERASE BETA' CHAIN (TRANSCRIPTASE BETA' CHAIN) (RNA POLYMERASE BETA' SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
MYPU_5610	MYPU_5460	gene:17577168	gene:17577148	DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-DIRECTED RNA POLYMERASE BETA CHAIN (TRANSCRIPTASE BETA CHAIN) (RNA POLYMERASE BETA SUBUNIT); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999

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