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rps15P rps15P rps3AE rps3AE rps13P rps13P rps4P rps4P rps11P rps11P rpl18E rpl18E rpl13P rpl13P rps9P rps9P rps2P rps2P rps12P rps12P rps7P rps7P rpl7AE rpl7AE rps10P rps10P rpl15E rpl15E rpl21E rpl21E rps8E rps8E rpl1 rpl1 rpl10 rpl10 rpl12 rpl12 rpl44e rpl44e rps6e rps6e rpl10e rpl10e rps19e rps19e rpl3 rpl3 rpl4 rpl4 rpl2 rpl2 rps19 rps19 rps3 rps3 rps17 rps17 rpl24 rpl24 rpl5 rpl5 rps8 rps8 rpl6 rpl6 rpl32e rpl32e rpl19e rpl19e rpl18 rpl18 rps5 rps5 rpl30 rpl30 rpl15 rpl15 rpl11 rpl11 rpl22 rpl22 rps4e rps4e rpl14 rpl14 rpl39E rpl39E rps24E rps24E rpl37AE rpl37AE rps14 rps14 rpl23 rpl23 rpl35ae rpl35ae rpl30E rpl30E rpl37E rpl37E rps28E rps28E rps17e rps17e rpl40E rpl40E rpL34E rpL34E rpl14E rpl14E rpl31E rpl31E rplXA rplXA rps27e rps27e rpl29 rpl29 rpl24E rpl24E
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rps15Prps15P SSU ribosomal protein S15P. (158 aa)
rps3AErps3AE SSU ribosomal protein S3AE; Belongs to the eukaryotic ribosomal protein eS1 family. (200 aa)
rps13Prps13P SSU ribosomal protein S13P/S18E; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (148 aa)
rps4Prps4P SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (180 aa)
rps11Prps11P SSU ribosomal protein S11P; Located on the platform of the 30S subunit. Belongs to the universal ribosomal protein uS11 family. (137 aa)
rpl18Erpl18E LSU ribosomal protein L18E; Belongs to the eukaryotic ribosomal protein eL18 family. (120 aa)
rpl13Prpl13P LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa)
rps9Prps9P SSU ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family. (135 aa)
rps2Prps2P SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family. (202 aa)
rps12Prps12P SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family. (147 aa)
rps7Prps7P SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family. (215 aa)
rpl7AErpl7AE LSU ribosomal protein L7AE; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. (128 aa)
rps10Prps10P SSU ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rpl15Erpl15E LSU ribosomal protein L15E; Belongs to the eukaryotic ribosomal protein eL15 family. (194 aa)
rpl21Erpl21E LSU ribosomal protein L21E; Belongs to the eukaryotic ribosomal protein eL21 family. (97 aa)
rps8Erps8E SSU ribosomal protein S8E. (127 aa)
rpl1LSU ribosomal protein L1P (rpl1P); Binds directly to 23S rRNA. Probably involved in E site tRNA release. (219 aa)
rpl10rpl10E LSU ribosomal protein L10E; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (341 aa)
rpl12rpl12A LSU ribosomal protein L12A; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the eukaryotic ribosomal protein P1/P2 family. (107 aa)
rpl44erpl44E LSU ribosomal protein L44E; Binds to the 23S rRNA. (94 aa)
rps6erps6E SSU ribosomal protein S6E; Belongs to the eukaryotic ribosomal protein eS6 family. (125 aa)
rpl10erpl10E ribosomal protein L10; Belongs to the universal ribosomal protein uL16 family. (181 aa)
rps19erps19E SSU ribosomal protein S19E; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family. (150 aa)
rpl3rpl3P LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (361 aa)
rpl4rpl4P LSU ribosomal protein L4P; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (255 aa)
rpl2rpl2P LSU ribosomal protein L2P; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (239 aa)
rps19rps19P SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (132 aa)
rps3rps3P SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Belongs to the universal ribosomal protein uS3 family. (210 aa)
rps17rps17P SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (116 aa)
rpl24rpl24P LSU ribosomal protein L24P; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (121 aa)
rpl5rpl5P LSU ribosomal protein L5P; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. May contact the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (188 aa)
rps8rps8E SSU ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (130 aa)
rpl6rpl6P LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (184 aa)
rpl32erpl32E LSU ribosomal protein L32E; Belongs to the eukaryotic ribosomal protein eL32 family. (130 aa)
rpl19erpl19E LSU ribosomal protein L19E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL19 family. (151 aa)
rpl18rpl18P LSU ribosomal protein L18P; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (203 aa)
rps5rps5P SSU ribosomal protein S5P; With S4 and S12 plays an important role in translational accuracy. (236 aa)
rpl30rpl30P LSU ribosomal protein L30P. (155 aa)
rpl15rpl15P LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (147 aa)
rpl11rpl11P LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors; Belongs to the universal ribosomal protein uL11 family. (164 aa)
rpl22rpl22P LSU ribosomal protein L22P; This protein binds specifically to 23S rRNA. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. (155 aa)
rps4erps4E SSU ribosomal protein S4E; Belongs to the eukaryotic ribosomal protein eS4 family. (243 aa)
rpl14rpl14P LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (141 aa)
rpl39Erpl39E LSU ribosomal protein L39E; Belongs to the eukaryotic ribosomal protein eL39 family. (51 aa)
rps24Erps24E SSU ribosomal protein S24E; Belongs to the eukaryotic ribosomal protein eS24 family. (99 aa)
rpl37AErpl37AE LSU ribosomal protein L37AE; Binds to the 23S rRNA. (83 aa)
rps14rps14P SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles. (56 aa)
rpl23rpl23P LSU ribosomal protein L23P; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family. (86 aa)
rpl35aerpl35AE LSU ribosomal protein L35AE; Belongs to the eukaryotic ribosomal protein eL33 family. (87 aa)
rpl30Erpl30E LSU ribosomal protein L30E; Belongs to the eukaryotic ribosomal protein eL30 family. (99 aa)
rpl37Erpl37E LSU ribosomal protein L37E; Binds to the 23S rRNA; Belongs to the eukaryotic ribosomal protein eL37 family. (62 aa)
rps28Erps28E SSU ribosomal protein S28E; Belongs to the eukaryotic ribosomal protein eS28 family. (71 aa)
rps17erps17E SSU ribosomal protein S17E; Belongs to the eukaryotic ribosomal protein eS17 family. (67 aa)
rpl40Erpl40E LSU ribosomal protein L40E; Belongs to the eukaryotic ribosomal protein eL40 family. (51 aa)
rpL34Erpl34E LSU ribosomal protein L34E; Belongs to the eukaryotic ribosomal protein eL34 family. (91 aa)
rpl14Erpl14E LSU ribosomal protein L14E; Belongs to the eukaryotic ribosomal protein eL14 family. (82 aa)
rpl31Erpl31E LSU ribosomal protein L31E; Belongs to the eukaryotic ribosomal protein eL31 family. (94 aa)
rplXArplXA LSU ribosomal protein LXA. (77 aa)
rps27erps27E SSU ribosomal protein S27E. (65 aa)
rpl29rpl29P LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family. (60 aa)
rpl24Erpl24E LSU ribosomal protein L24E; Binds to the 23S rRNA. (67 aa)
Your Current Organism:
Pyrococcus abyssi
NCBI taxonomy Id: 272844
Other names: P. abyssi GE5, Pyrococcus abyssi GE5, Pyrococcus abyssi str. GE5, Pyrococcus abyssi str. Orsay, Pyrococcus abyssi strain GE5
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