31 items (Rhodobacter capsulatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ADE85413.1	Conserved hypothetical protein. (142 aa)
	gcp	O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (361 aa)
	bioB	Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (315 aa)
	ADE87075.1	Rieske (2Fe-2S) domain protein. (411 aa)
	nifU2	Nitrogen fixation protein NifU-2. (135 aa)
	ADE86980.1	Cytochrome P450 family protein. (472 aa)
	ADE86978.1	Cytochrome P450 family protein. (466 aa)
	ADE86953.1	NifU domain protein. (188 aa)
	ADE86432.1	Cytochrome c/b561 family protein. (152 aa)
	ADE86412.1	Cytochrome c'. (150 aa)
	ADE86360.1	Heme NO binding domain protein. (196 aa)
	ADE86167.1	Cytochrome P450 family protein. (402 aa)
	ADE85967.1	Radical SAM family protein. (408 aa)
	nifJ	Pyruvate-flavodoxin oxidoreductase. (1209 aa)
	ADE85467.1	Transcriptional regulator, BadM/Rrf2 family. (168 aa)
	nuoI	NADH-quinone oxidoreductase, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (163 aa)
	nuoB	NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (177 aa)
	ispG	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. (373 aa)
	fes	Enterochelin esterase. (521 aa)
	bfr	Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (161 aa)
	ADE84581.1	Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B. (276 aa)
	xdhA	Xanthine dehydrogenase, small subunit. (462 aa)
	xdhB	Xanthine dehydrogenase, molybdopterin binding subunit. (776 aa)
	hypD	Hydrogenase expression/formation protein HypD; Belongs to the HypD family. (377 aa)
	hypC	Hydrogenase assembly chaperone HypC/HupF. (96 aa)
	hupJ	Rubredoxin HupJ. (278 aa)
	hupH	Hydrogenase expression/formation protein HupH. (275 aa)
	hupF	Hydrogenase maturation chaperone HupF. (106 aa)
	hupC	Hydrogenase, cytochrome b subunit. (262 aa)
	nifU1	Nitrogen fixation protein NifU-1. (142 aa)
	ADE83895.1	Radical SAM family protein. (687 aa)

Your Current Organism:

Rhodobacter capsulatus

NCBI taxonomy Id: 272942
Other names: R. capsulatus SB 1003, Rhodobacter capsulatus SB 1003

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADE85413.1	ADE86953.1	RCAP_rcc01668	RCAP_rcc03229	Conserved hypothetical protein.	NifU domain protein.	0.471
ADE85413.1	nifJ	RCAP_rcc01668	RCAP_rcc01728	Conserved hypothetical protein.	Pyruvate-flavodoxin oxidoreductase.	0.535
ADE85413.1	nifU1	RCAP_rcc01668	RCAP_rcc00569	Conserved hypothetical protein.	Nitrogen fixation protein NifU-1.	0.436
ADE85413.1	nifU2	RCAP_rcc01668	RCAP_rcc03271	Conserved hypothetical protein.	Nitrogen fixation protein NifU-2.	0.436
ADE85467.1	nifU1	RCAP_rcc01722	RCAP_rcc00569	Transcriptional regulator, BadM/Rrf2 family.	Nitrogen fixation protein NifU-1.	0.665
ADE85467.1	nifU2	RCAP_rcc01722	RCAP_rcc03271	Transcriptional regulator, BadM/Rrf2 family.	Nitrogen fixation protein NifU-2.	0.665
ADE86167.1	ADE86980.1	RCAP_rcc02437	RCAP_rcc03256	Cytochrome P450 family protein.	Cytochrome P450 family protein.	0.601
ADE86953.1	ADE85413.1	RCAP_rcc03229	RCAP_rcc01668	NifU domain protein.	Conserved hypothetical protein.	0.471
ADE86953.1	nifJ	RCAP_rcc03229	RCAP_rcc01728	NifU domain protein.	Pyruvate-flavodoxin oxidoreductase.	0.598
ADE86953.1	nifU1	RCAP_rcc03229	RCAP_rcc00569	NifU domain protein.	Nitrogen fixation protein NifU-1.	0.499
ADE86953.1	nifU2	RCAP_rcc03229	RCAP_rcc03271	NifU domain protein.	Nitrogen fixation protein NifU-2.	0.488
ADE86953.1	nuoI	RCAP_rcc03229	RCAP_rcc01531	NifU domain protein.	NADH-quinone oxidoreductase, I subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.571
ADE86980.1	ADE86167.1	RCAP_rcc03256	RCAP_rcc02437	Cytochrome P450 family protein.	Cytochrome P450 family protein.	0.601
hupC	hupF	RCAP_rcc00769	RCAP_rcc00771	Hydrogenase, cytochrome b subunit.	Hydrogenase maturation chaperone HupF.	0.945
hupC	hupH	RCAP_rcc00769	RCAP_rcc00773	Hydrogenase, cytochrome b subunit.	Hydrogenase expression/formation protein HupH.	0.975
hupC	hupJ	RCAP_rcc00769	RCAP_rcc00774	Hydrogenase, cytochrome b subunit.	Rubredoxin HupJ.	0.906
hupC	hypC	RCAP_rcc00769	RCAP_rcc00779	Hydrogenase, cytochrome b subunit.	Hydrogenase assembly chaperone HypC/HupF.	0.567
hupC	hypD	RCAP_rcc00769	RCAP_rcc00780	Hydrogenase, cytochrome b subunit.	Hydrogenase expression/formation protein HypD; Belongs to the HypD family.	0.606
hupC	nifJ	RCAP_rcc00769	RCAP_rcc01728	Hydrogenase, cytochrome b subunit.	Pyruvate-flavodoxin oxidoreductase.	0.748
hupC	nuoB	RCAP_rcc00769	RCAP_rcc01518	Hydrogenase, cytochrome b subunit.	NADH-quinone oxidoreductase, B subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.	0.457