STRINGSTRING
RSP_0030 RSP_0030 RSP_0085 RSP_0085 RSP_0148 RSP_0148 RSP_0149 RSP_0149 RSP_0150 RSP_0150 RSP_0329 RSP_0329 RSP_0335 RSP_0335 RSP_0413 RSP_0413 RSP_0454 RSP_0454 RSP_0512 RSP_0512 RSP_1063 RSP_1063 RSP_1306 RSP_1306 RSP_1357 RSP_1357 RSP_1567 RSP_1567 RSP_2229 RSP_2229 RSP_2280 RSP_2280 RSP_2281 RSP_2281 RSP_2407 RSP_2407 dorS dorS RSP_3101 RSP_3101 RSP_3105 RSP_3105 RSP_3402 RSP_3402 RSP_3513 RSP_3513
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RSP_0030Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); IMG reference gene:2512955013; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (833 aa)
RSP_0085Multisensor hybrid histidine kinase; IMG reference gene:2512955075; PFAM: Response regulator receiver domain; His Kinase A (phospho-acceptor) domain; PAS fold; Hpt domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; TIGRFAM: PAS domain S-box; truncated by 19 aa. (869 aa)
RSP_0148IMG reference gene:2512955144; PFAM: Histidine kinase; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain. (350 aa)
RSP_0149CheY-like receiver protein; IMG reference gene:2512955145; PFAM: Response regulator receiver domain. (145 aa)
RSP_0150Chase sensor signal transducdtion histidine kinase; IMG reference gene:2512955146; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE3 domain. (494 aa)
RSP_0329Diguanylate cyclase with GAF sensor; IMG reference gene:2512955339; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (336 aa)
RSP_0335Diguanylate cyclase/phosphodiesterase; IMG reference gene:2512955345; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain. (789 aa)
RSP_0413IMG reference gene:2512955426; PFAM: Response regulator receiver domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (461 aa)
RSP_0454IMG reference gene:2512955464; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain. (768 aa)
RSP_0512PAS/PAC sensor hybrid histidine kinase; IMG reference gene:2512955524; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box. (945 aa)
RSP_1063Diguanylate cyclase/phosphodiesterase; IMG reference gene:2512956104; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (508 aa)
RSP_1306PAS sensor Signal Tranduction Histidine Kinase; IMG reference gene:2512956353; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold; TIGRFAM: PAS domain S-box. (949 aa)
RSP_1357Cytoplasmic sensor hybrid histidine kinase; IMG reference gene:2512956404; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain. (849 aa)
RSP_1567Putative sensory transduction histidine kinase; IMG reference gene:2512953462; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; TIGRFAM: PAS domain S-box. (855 aa)
RSP_2229Chemotaxis multidomain, CheB methylesterase/CheR, Methylase; IMG reference gene:2512954158; PFAM: CheB methylesterase; HWE histidine kinase; CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain; PAS fold; TIGRFAM: PAS domain S-box. (1170 aa)
RSP_2280PAS sensor hybrid histidine kinase; IMG reference gene:2512954214; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PAS fold. (640 aa)
RSP_2281Two-component trancriptional regulator, winged helix family; IMG reference gene:2512954215; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (235 aa)
RSP_2407Periplasmic sensor hybrid histidine kinase; IMG reference gene:2512954351; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain. (575 aa)
dorSIMG reference gene:2512956545; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Hpt domain. (813 aa)
RSP_3101Periplasmic sensor diguanylate cyclase/phosphodiesterase; IMG reference gene:2512956603; PFAM: EAL domain; GGDEF domain; CHASE4 domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (772 aa)
RSP_3105PAS sensor protein; IMG reference gene:2512956609; PFAM: HWE histidine kinase; PAS fold; TIGRFAM: PAS domain S-box. (728 aa)
RSP_3402Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); IMG reference gene:2512956912; PFAM: EAL domain; GAF domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; truncated by 3 aa. (878 aa)
RSP_3513Diguanylate cyclase with GAF sensor; IMG reference gene:2512957026; PFAM: GAF domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (325 aa)
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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