STRINGSTRING
RSP_1611 RSP_1611 RSP_1612 RSP_1612 RSP_2129 RSP_2129 RSP_2130 RSP_2130 nifR3 nifR3 ntrB ntrB ntrC ntrC ntrY ntrY ntrX ntrX trkA trkA trkH1 trkH1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RSP_1611Sensor histidine kinase; IMG reference gene:2512953509; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (597 aa)
RSP_1612Sigma-54 dependent transcriptional regulator; IMG reference gene:2512953510; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (439 aa)
RSP_2129Sensor Histidine kinase; IMG reference gene:2512954053; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain. (587 aa)
RSP_2130Two component, sigma54 specific transcriptional regulator, fis family; IMG reference gene:2512954054; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (442 aa)
nifR3tRNA-dihydrouridine synthase, nifR3; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (326 aa)
ntrBNitrogen regulation protein, NtrB signal transduction histidine kinase; IMG reference gene:2512954768; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold. (368 aa)
ntrCNitrogen metabolism transcriptional regulator, NtrC; IMG reference gene:2512954767; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (455 aa)
ntrYNitrogen regulation protein, NtrY, Signal transduction histidine kinase; IMG reference gene:2512954766; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; truncated by 16 aa. (753 aa)
ntrXNitrogen assimilation transcriptional regulator, NtrX; IMG reference gene:2512954765; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (476 aa)
trkAPotassium uptake transporter, NAD-binding subunit, TrkA; IMG reference gene:2512954764; PFAM: TrkA-N domain; TrkA-C domain. (458 aa)
trkH1Potassium uptake transporter, transmembrane subunit, TrkH; IMG reference gene:2512954763; PFAM: Cation transport protein. (503 aa)
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.