(12 nodes) Signaling, and Pentapeptide repeat network (Rickettsia prowazekii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RP016	Unknown. (302 aa)
	RP017	Unknown; No ATG or GTG initiation codon found. ATA annotated as initiation codon. (627 aa)
	RP018	190 KD ANTIGEN PRECURSOR (sca1). (347 aa)
	RP071	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR). (237 aa)
	RP229	HISTIDINE KINASE SENSOR PROTEIN (barA). (497 aa)
	RP237	Unknown. (450 aa)
	RP426	OSMOLARITY SENSOR PROTEIN ENVZ (envZ). (437 aa)
	RP427	PETR PROTEIN (ompR). (225 aa)
	RP465	ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR). (921 aa)
	RP562	NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614. (475 aa)
	RP563	Unknown. (588 aa)
	RP614	NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562. (601 aa)

Your Current Organism:

Rickettsia prowazekii

NCBI taxonomy Id: 272947
Other names: R. prowazekii str. Madrid E, Rickettsia prowazekii str. Madrid E, Rickettsia prowazekii strain Madrid E

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RP016	RP017	gene:17555099	gene:17555100	Unknown.	Unknown; No ATG or GTG initiation codon found. ATA annotated as initiation codon.	0.773
RP016	RP018	gene:17555099	gene:17555101	Unknown.	190 KD ANTIGEN PRECURSOR (sca1).	0.808
RP017	RP016	gene:17555100	gene:17555099	Unknown; No ATG or GTG initiation codon found. ATA annotated as initiation codon.	Unknown.	0.773
RP017	RP018	gene:17555100	gene:17555101	Unknown; No ATG or GTG initiation codon found. ATA annotated as initiation codon.	190 KD ANTIGEN PRECURSOR (sca1).	0.528
RP018	RP016	gene:17555101	gene:17555099	190 KD ANTIGEN PRECURSOR (sca1).	Unknown.	0.808
RP018	RP017	gene:17555101	gene:17555100	190 KD ANTIGEN PRECURSOR (sca1).	Unknown; No ATG or GTG initiation codon found. ATA annotated as initiation codon.	0.528
RP071	RP229	gene:17555154	gene:17555310	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR).	HISTIDINE KINASE SENSOR PROTEIN (barA).	0.954
RP071	RP426	gene:17555154	gene:17555506	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR).	OSMOLARITY SENSOR PROTEIN ENVZ (envZ).	0.937
RP071	RP465	gene:17555154	gene:17555545	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR).	ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR).	0.972
RP071	RP562	gene:17555154	gene:17555642	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR).	NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614.	0.426
RP071	RP614	gene:17555154	gene:17555693	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR).	NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562.	0.790
RP229	RP071	gene:17555310	gene:17555154	HISTIDINE KINASE SENSOR PROTEIN (barA).	TRANSCRIPTIONAL ACTIVATOR PROTEIN CZCR (czcR).	0.954
RP229	RP237	gene:17555310	gene:17555318	HISTIDINE KINASE SENSOR PROTEIN (barA).	Unknown.	0.999
RP229	RP426	gene:17555310	gene:17555506	HISTIDINE KINASE SENSOR PROTEIN (barA).	OSMOLARITY SENSOR PROTEIN ENVZ (envZ).	0.705
RP229	RP427	gene:17555310	gene:17555507	HISTIDINE KINASE SENSOR PROTEIN (barA).	PETR PROTEIN (ompR).	0.968
RP229	RP465	gene:17555310	gene:17555545	HISTIDINE KINASE SENSOR PROTEIN (barA).	ALKALINE PHOSPHATASE SYNTHESIS SENSOR PROTEIN PHOR (phoR).	0.759
RP229	RP562	gene:17555310	gene:17555642	HISTIDINE KINASE SENSOR PROTEIN (barA).	NITROGEN ASSIMILATION REGULATORY PROTEIN NTRX (ntrX); Member of the two-component regulatory system RP562/RP614.	0.768
RP229	RP614	gene:17555310	gene:17555693	HISTIDINE KINASE SENSOR PROTEIN (barA).	NITROGEN REGULATION PROTEIN NTRY (ntrY); Member of the two-component regulatory system RP614/RP562.	0.442
RP237	RP229	gene:17555318	gene:17555310	Unknown.	HISTIDINE KINASE SENSOR PROTEIN (barA).	0.999
RP237	RP426	gene:17555318	gene:17555506	Unknown.	OSMOLARITY SENSOR PROTEIN ENVZ (envZ).	0.869