11 items (Saccharolobus solfataricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fadD-1	Long-chain-fatty-acid--CoA ligase (fadD-1); Lipid metabolism. (454 aa)
	aceA/icl	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle. (437 aa)
	aceB/mas	Malate synthase, putative (aceB/mas); Energy Metabolism, Tri-Carboxylic Acid Cycle. (826 aa)
	acsA-2	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism. (260 aa)
	acsA-2-2	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Carboxy-end is SSO1340; Lipid metabolism. (287 aa)
	acsA-3	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-3); Interrupted by ISC1439 transposase. Carboxy-end is SSO9201; Lipid metabolism. (457 aa)
	lipP-2	Lipase (lipP-2); High similarity with psychrotroph Pseudomonas sp. strain B11 1 lipP gene; Lipid metabolism. (311 aa)
	fadD-2	Long-chain-fatty-acid--CoA ligase (fadD-2); Lipid metabolism. (559 aa)
	SSO2653	Conserved hypothetical protein; Putative bacitracin transport permease. Similarity with MJ0374, aq_1706, MTH798. (219 aa)
	alkK-3	Medium-chain-fatty-acid--CoA ligase (alkK-3); Lipid metabolism. (507 aa)
	fadD-3	Long-chain-fatty-acid--CoA ligase (fadD-3); Lipid metabolism. (513 aa)

Your Current Organism:

Saccharolobus solfataricus

NCBI taxonomy Id: 273057
Other names: S. solfataricus P2, Saccharolobus solfataricus P2, Sulfolobus solfataricus P2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SSO2653	alkK-3	SSO2653	SSO2808	Conserved hypothetical protein; Putative bacitracin transport permease. Similarity with MJ0374, aq_1706, MTH798.	Medium-chain-fatty-acid--CoA ligase (alkK-3); Lipid metabolism.	0.714
SSO2653	fadD-1	SSO2653	SSO0369	Conserved hypothetical protein; Putative bacitracin transport permease. Similarity with MJ0374, aq_1706, MTH798.	Long-chain-fatty-acid--CoA ligase (fadD-1); Lipid metabolism.	0.714
SSO2653	fadD-2	SSO2653	SSO2523	Conserved hypothetical protein; Putative bacitracin transport permease. Similarity with MJ0374, aq_1706, MTH798.	Long-chain-fatty-acid--CoA ligase (fadD-2); Lipid metabolism.	0.714
SSO2653	fadD-3	SSO2653	SSO3064	Conserved hypothetical protein; Putative bacitracin transport permease. Similarity with MJ0374, aq_1706, MTH798.	Long-chain-fatty-acid--CoA ligase (fadD-3); Lipid metabolism.	0.714
aceA/icl	aceB/mas	SSO1333	SSO1334	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Malate synthase, putative (aceB/mas); Energy Metabolism, Tri-Carboxylic Acid Cycle.	0.999
aceA/icl	acsA-2	SSO1333	SSO1340	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	0.451
aceA/icl	acsA-2-2	SSO1333	SSO1342	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Carboxy-end is SSO1340; Lipid metabolism.	0.451
aceA/icl	acsA-3	SSO1333	SSO1903	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-3); Interrupted by ISC1439 transposase. Carboxy-end is SSO9201; Lipid metabolism.	0.451
aceB/mas	aceA/icl	SSO1334	SSO1333	Malate synthase, putative (aceB/mas); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle.	0.999
aceB/mas	acsA-2	SSO1334	SSO1340	Malate synthase, putative (aceB/mas); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	0.560
aceB/mas	acsA-2-2	SSO1334	SSO1342	Malate synthase, putative (aceB/mas); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Carboxy-end is SSO1340; Lipid metabolism.	0.560
aceB/mas	acsA-3	SSO1334	SSO1903	Malate synthase, putative (aceB/mas); Energy Metabolism, Tri-Carboxylic Acid Cycle.	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-3); Interrupted by ISC1439 transposase. Carboxy-end is SSO9201; Lipid metabolism.	0.560
acsA-2	aceA/icl	SSO1340	SSO1333	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle.	0.451
acsA-2	aceB/mas	SSO1340	SSO1334	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	Malate synthase, putative (aceB/mas); Energy Metabolism, Tri-Carboxylic Acid Cycle.	0.560
acsA-2	acsA-2-2	SSO1340	SSO1342	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Carboxy-end is SSO1340; Lipid metabolism.	0.967
acsA-2	alkK-3	SSO1340	SSO2808	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	Medium-chain-fatty-acid--CoA ligase (alkK-3); Lipid metabolism.	0.552
acsA-2	fadD-1	SSO1340	SSO0369	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	Long-chain-fatty-acid--CoA ligase (fadD-1); Lipid metabolism.	0.550
acsA-2	fadD-2	SSO1340	SSO2523	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	Long-chain-fatty-acid--CoA ligase (fadD-2); Lipid metabolism.	0.530
acsA-2	fadD-3	SSO1340	SSO3064	Acetyl-CoA synthetase (acetate-CoA ligase) carboxy-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Amino-end is SSO1342; Lipid metabolism.	Long-chain-fatty-acid--CoA ligase (fadD-3); Lipid metabolism.	0.545
acsA-2-2	aceA/icl	SSO1342	SSO1333	Acetyl-CoA synthetase (acetate-CoA ligase) amino-end fragment. (acsA-2); Interrupted by transposase in ISC1316. Carboxy-end is SSO1340; Lipid metabolism.	Isocitrate lyase (aceA/icl); Energy Metabolism, Tri-Carboxylic Acid Cycle.	0.451