(9 nodes) NADH dehydrogenase (ubiquinone) activity, and NADH dehydrogenase network (Saccharolobus solfataricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NuoA	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport. (129 aa)
	NuoC	NADH dehydrogenase subunit C (NuoC); Energy Metabolism, Electron transport. (169 aa)
	NuoD	NADH dehydrogenase subunit D (NuoD); Energy Metabolism, Electron transport; Belongs to the complex I 49 kDa subunit family. (410 aa)
	NuoH	NADH dehydrogenase subunit H (NuoH); Energy Metabolism, Electron transport. (352 aa)
	NuoI	NADH dehydrogenase subunit I (NuoI); Energy Metabolism, Electron transport. (188 aa)
	NuoJ	NADH dehydrogenase subunit J (NuoJ); Energy Metabolism, Electron transport. (167 aa)
	NuoL	NADH dehydrogenase subunit L (NuoL); Genes seems duplicated compared to other homologues; Energy Metabolism, Electron transport. (1148 aa)
	NuoN	NADH dehydrogenase subunit N (NuoN); Energy Metabolism, Electron transport. (483 aa)
	NuoB	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family. (170 aa)

Your Current Organism:

Saccharolobus solfataricus

NCBI taxonomy Id: 273057
Other names: S. solfataricus P2, Saccharolobus solfataricus P2, Sulfolobus solfataricus P2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NuoA	NuoB	SSO0322	SSO0665	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	0.999
NuoA	NuoC	SSO0322	SSO0323	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit C (NuoC); Energy Metabolism, Electron transport.	0.999
NuoA	NuoD	SSO0322	SSO0324	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit D (NuoD); Energy Metabolism, Electron transport; Belongs to the complex I 49 kDa subunit family.	0.999
NuoA	NuoH	SSO0322	SSO0325	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit H (NuoH); Energy Metabolism, Electron transport.	0.999
NuoA	NuoI	SSO0322	SSO0326	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit I (NuoI); Energy Metabolism, Electron transport.	0.999
NuoA	NuoJ	SSO0322	SSO0327	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit J (NuoJ); Energy Metabolism, Electron transport.	0.999
NuoA	NuoL	SSO0322	SSO0328	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit L (NuoL); Genes seems duplicated compared to other homologues; Energy Metabolism, Electron transport.	0.999
NuoA	NuoN	SSO0322	SSO0329	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit N (NuoN); Energy Metabolism, Electron transport.	0.999
NuoB	NuoA	SSO0665	SSO0322	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	0.999
NuoB	NuoC	SSO0665	SSO0323	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit C (NuoC); Energy Metabolism, Electron transport.	0.999
NuoB	NuoD	SSO0665	SSO0324	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit D (NuoD); Energy Metabolism, Electron transport; Belongs to the complex I 49 kDa subunit family.	0.999
NuoB	NuoH	SSO0665	SSO0325	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit H (NuoH); Energy Metabolism, Electron transport.	0.999
NuoB	NuoI	SSO0665	SSO0326	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit I (NuoI); Energy Metabolism, Electron transport.	0.999
NuoB	NuoJ	SSO0665	SSO0327	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit J (NuoJ); Energy Metabolism, Electron transport.	0.999
NuoB	NuoL	SSO0665	SSO0328	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit L (NuoL); Genes seems duplicated compared to other homologues; Energy Metabolism, Electron transport.	0.999
NuoB	NuoN	SSO0665	SSO0329	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	NADH dehydrogenase subunit N (NuoN); Energy Metabolism, Electron transport.	0.999
NuoC	NuoA	SSO0323	SSO0322	NADH dehydrogenase subunit C (NuoC); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit A (NuoA); Energy Metabolism, Electron transport.	0.999
NuoC	NuoB	SSO0323	SSO0665	NADH dehydrogenase subunit C (NuoC); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit B (NuoB); Energy Metabolism, Electron transport; Belongs to the complex I 20 kDa subunit family.	0.999
NuoC	NuoD	SSO0323	SSO0324	NADH dehydrogenase subunit C (NuoC); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit D (NuoD); Energy Metabolism, Electron transport; Belongs to the complex I 49 kDa subunit family.	0.999
NuoC	NuoH	SSO0323	SSO0325	NADH dehydrogenase subunit C (NuoC); Energy Metabolism, Electron transport.	NADH dehydrogenase subunit H (NuoH); Energy Metabolism, Electron transport.	0.999