(8 nodes) Immunoglobulin-like fold network (Saccharolobus solfataricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SSO0011	Predicted membrane protein conserved in archaea. (974 aa)
	SSO0687	Hypothetical protein. (851 aa)
	SSO1033	Hypothetical protein. (725 aa)
	SSO1141	Protease related protein; Proteases. (1269 aa)
	treZ	Malto-oligosyltrehalose trehalohydrolase (treZ); Energy Metabolism, Sugar metabolism. (561 aa)
	treX	Glycogen debranching enzyme (treX); Energy Metabolism, Sugar metabolism. (718 aa)
	SSO3032	Beta-xylosidase; Glycosyl hydrolase family 3; Central Intermediary Metabolism, Cytoplasmic polysaccharides. (754 aa)
	gusB	Beta-glucuronidase (gusB); Glycosyl hydrolase family 2; Central Intermediary Metabolism, Cytoplasmic polysaccharides. (570 aa)

Your Current Organism:

Saccharolobus solfataricus

NCBI taxonomy Id: 273057
Other names: S. solfataricus P2, Saccharolobus solfataricus P2, Sulfolobus solfataricus P2

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SSO3032	gusB	SSO3032	SSO3036	Beta-xylosidase; Glycosyl hydrolase family 3; Central Intermediary Metabolism, Cytoplasmic polysaccharides.	Beta-glucuronidase (gusB); Glycosyl hydrolase family 2; Central Intermediary Metabolism, Cytoplasmic polysaccharides.	0.915
gusB	SSO3032	SSO3036	SSO3032	Beta-glucuronidase (gusB); Glycosyl hydrolase family 2; Central Intermediary Metabolism, Cytoplasmic polysaccharides.	Beta-xylosidase; Glycosyl hydrolase family 3; Central Intermediary Metabolism, Cytoplasmic polysaccharides.	0.915
treX	treZ	SSO2094	SSO2093	Glycogen debranching enzyme (treX); Energy Metabolism, Sugar metabolism.	Malto-oligosyltrehalose trehalohydrolase (treZ); Energy Metabolism, Sugar metabolism.	0.986
treZ	treX	SSO2093	SSO2094	Malto-oligosyltrehalose trehalohydrolase (treZ); Energy Metabolism, Sugar metabolism.	Glycogen debranching enzyme (treX); Energy Metabolism, Sugar metabolism.	0.986