STRINGSTRING
Rtn Rtn TTE2639 TTE2639 TTE2335 TTE2335 OmpR5 OmpR5 TTE1100 TTE1100 TTE1052 TTE1052
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RtnDiguanylate cyclase/phosphodiesterase domain 2 (EAL); Best Blastp hit = gi|7469874|pir||S76238 hypothetical protein sll0267 - Synechocystis sp. (strain PCC 6803) gi|1653584|dbj|BAA18497.1| (D90914) hypothetical protein [Synechocystis sp.], score 370, E-value 1.00E-101. (793 aa)
TTE2639Predicted hydrolase of the HD superfamily (permuted catalytic motifs); Best Blastp hit = gi|11499451|ref|NP_070692.1| hypothetical protein [Archaeoglobus fulgidus] gi|7483727|pir||B69483 hypothetical protein AF1867 - Archaeoglobus fulgidus gi|2648683|gb|AAB89390.1| (AE000974) A. fulgidus predicted coding region AF1867 [Archaeoglobus fulgidus], score 223, E-value 7.00E-57. (909 aa)
TTE2335Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); Best Blastp hit = gi|10175658|dbj|BAB06755.1| (AP001517) two-component sensor histidine kinase [Bacillus halodurans], score 177, E-value 4.00E-43. (553 aa)
OmpR5Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain; Best Blastp hit = gi|6978029|gb|AAF34247.1|AF168003_2 (AF168003) putative response regulator [Desulfovibrio gigas], score 138, E-value 1.00E-31. (334 aa)
TTE1100Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); Best Blastp hit = gi|7514425|pir||H70302 conserved hypothetical protein aq_035 - Aquifex aeolicus gi|2982791|gb|AAC06416.1| (AE000670) hypothetical protein [Aquifex aeolicus], score 151, E-value 2.00E-35. (670 aa)
TTE1052Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); Best Blastp hit = gi|7514501|pir||C70324 conserved hypothetical protein aq_265 - Aquifex aeolicus gi|2982975|gb|AAC06589.1| (AE000681) hypothetical protein [Aquifex aeolicus], score 127, E-value 1.00E-28. (241 aa)
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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