STRINGSTRING
Rtn Rtn TTE1100 TTE1100
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RtnDiguanylate cyclase/phosphodiesterase domain 2 (EAL); Best Blastp hit = gi|7469874|pir||S76238 hypothetical protein sll0267 - Synechocystis sp. (strain PCC 6803) gi|1653584|dbj|BAA18497.1| (D90914) hypothetical protein [Synechocystis sp.], score 370, E-value 1.00E-101. (793 aa)
TTE1100Diguanylate cyclase/phosphodiesterase domain 1 (GGDEF); Best Blastp hit = gi|7514425|pir||H70302 conserved hypothetical protein aq_035 - Aquifex aeolicus gi|2982791|gb|AAC06416.1| (AE000670) hypothetical protein [Aquifex aeolicus], score 151, E-value 2.00E-35. (670 aa)
Your Current Organism:
Caldanaerobacter subterraneus
NCBI taxonomy Id: 273068
Other names: C. subterraneus subsp. tengcongensis MB4, Caldanaerobacter subterraneus subsp. tengcongensis MB4, Thermoanaerobacter tengcongensis MB4, Thermoanaerobacter tengcongensis str. MB4, Thermoanaerobacter tengcongensis strain MB4
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