(31 nodes) Mixed, incl. ABC transporter-like, conserved site, and ABC-2 type transporter network (Thermoplasma volcanium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVG0175536	ABC transport system ATP-binding protein. (305 aa)
	TVG0176458	Hypothetical protein. (275 aa)
	TVG0178020	Hypothetical protein. (202 aa)
	TVG0180022	Hypothetical protein. (238 aa)
	TVG0180289	Hypothetical protein. (69 aa)
	TVG0516499	Hypothetical protein. (203 aa)
	TVG0517148	Hypothetical protein. (241 aa)
	TVG0517863	ABC transport system ATP-binding protein. (279 aa)
	TVG0886521	TVG0886521 protein. (194 aa)
	TVG0980491	Hypothetical protein. (282 aa)
	TVG0982439	Hypothetical protein. (312 aa)
	TVG0986825	Hypothetical protein. (151 aa)
	TVG0987795	ABC transport system ATP-binding protein. (329 aa)
	TVG0988599	ABC-2 integral membrane protein. (267 aa)
	TVG0989851	Oxygen-independent coproporphyrinogen III oxidase. (382 aa)
	TVG0990507	Hypohtetical protein. (219 aa)
	TVG1089346	Amino acid transporter. (578 aa)
	TVG1093558	TVG1093558 protein. (265 aa)
	TVG1094530	ABC transport system ATP-binding protein. (306 aa)
	TVG1095254	ABC-2 integral membrane protein. (247 aa)
	TVG1433995	TVG1433995 protein. (71 aa)
	TVG1434253	TVG1434253 protein. (137 aa)
	TVG1434889	Hypothetical protein. (238 aa)
	TVG1435680	Hypothetical protein. (364 aa)
	TVG1438442	Multidrug resistance protein. (480 aa)
	TVG1439394	ABC transport system ATP-binding protein. (305 aa)
	TVG1440155	ABC-2 integral membrane protein. (254 aa)
	TVG1440802	Hypothetical protein. (214 aa)
	TVG1441436	Hypothetical protein. (123 aa)
	TVG1441685	TVG1441685 protein. (60 aa)
	TVG1442264	TVG1442264 protein. (113 aa)

Your Current Organism:

Thermoplasma volcanium

NCBI taxonomy Id: 273116
Other names: T. volcanium GSS1, Thermoplasma volcanium GSS1, Thermoplasma volcanium str. GSS1, Thermoplasma volcanium strain GSS1

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVG0175536	TVG0176458	gene:9380936	gene:9380937	ABC transport system ATP-binding protein.	Hypothetical protein.	0.981
TVG0175536	TVG0178020	gene:9380936	gene:9380938	ABC transport system ATP-binding protein.	Hypothetical protein.	0.598
TVG0175536	TVG0517148	gene:9380936	gene:9381310	ABC transport system ATP-binding protein.	Hypothetical protein.	0.405
TVG0175536	TVG0988599	gene:9380936	gene:9381756	ABC transport system ATP-binding protein.	ABC-2 integral membrane protein.	0.492
TVG0175536	TVG1095254	gene:9380936	gene:9381864	ABC transport system ATP-binding protein.	ABC-2 integral membrane protein.	0.405
TVG0175536	TVG1440155	gene:9380936	gene:9382201	ABC transport system ATP-binding protein.	ABC-2 integral membrane protein.	0.405
TVG0176458	TVG0175536	gene:9380937	gene:9380936	Hypothetical protein.	ABC transport system ATP-binding protein.	0.981
TVG0176458	TVG0178020	gene:9380937	gene:9380938	Hypothetical protein.	Hypothetical protein.	0.548
TVG0176458	TVG0517863	gene:9380937	gene:9381311	Hypothetical protein.	ABC transport system ATP-binding protein.	0.686
TVG0176458	TVG0987795	gene:9380937	gene:9381755	Hypothetical protein.	ABC transport system ATP-binding protein.	0.686
TVG0176458	TVG1094530	gene:9380937	gene:9381863	Hypothetical protein.	ABC transport system ATP-binding protein.	0.686
TVG0176458	TVG1439394	gene:9380937	gene:9382200	Hypothetical protein.	ABC transport system ATP-binding protein.	0.686
TVG0178020	TVG0175536	gene:9380938	gene:9380936	Hypothetical protein.	ABC transport system ATP-binding protein.	0.598
TVG0178020	TVG0176458	gene:9380938	gene:9380937	Hypothetical protein.	Hypothetical protein.	0.548
TVG0178020	TVG0180022	gene:9380938	gene:9380940	Hypothetical protein.	Hypothetical protein.	0.524
TVG0178020	TVG0180289	gene:9380938	gene:9380941	Hypothetical protein.	Hypothetical protein.	0.455
TVG0178020	TVG0982439	gene:9380938	gene:9381750	Hypothetical protein.	Hypothetical protein.	0.429
TVG0180022	TVG0178020	gene:9380940	gene:9380938	Hypothetical protein.	Hypothetical protein.	0.524
TVG0180022	TVG0180289	gene:9380940	gene:9380941	Hypothetical protein.	Hypothetical protein.	0.611
TVG0180289	TVG0178020	gene:9380941	gene:9380938	Hypothetical protein.	Hypothetical protein.	0.455