(32 nodes) Mixed, incl. MetI-like superfamily, and ABC transporter-like, ATP-binding domain network (Thermoplasma volcanium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVG0209075	TVG0209075 protein. (112 aa)
	TVG0210789	TVG0210789 protein. (519 aa)
	TVG0211687	ABC transport system permease protein P1P2A. (296 aa)
	TVG0212495	ABC transport system permease protein P1P2A. (268 aa)
	TVG0213590	ABC transport system ATP-binding protein P1P2A. (353 aa)
	TVG0500467	ABC transport system ATP-binding protein A1A2. (306 aa)
	TVG0501242	ABC transport system ATP-binding protein A1A2. (257 aa)
	TVG0874790	Hypothetical protein. (150 aa)
	TVG0875243	Anaerobic glycerol-3-phosphate dehydrogenase subunit alpha. (414 aa)
	TVG0876539	Hypothetical protein. (161 aa)
	TVG0877087	Hypothetical protein. (434 aa)
	TVG0878378	Transposase. (134 aa)
	TVG0878825	TVG0878825 protein. (66 aa)
	TVG1191381	TVG1191381 protein. (164 aa)
	TVG1192129	Glycerol kinase. (498 aa)
	TVG1194688	TVG1194688 protein. (307 aa)
	TVG1196198	ABC transport system protein SP1P2A. (440 aa)
	TVG1197131	ABC transport system permease protein SP1P2A. (309 aa)
	TVG1198021	ABC transport system permease protein SP1P2A. (295 aa)
	TVG1199143	ABC transport system ATP-binding protein SP1P2A. (371 aa)
	TVG1201040	TVG1201040 protein. (643 aa)
	TVG1202803	TVG1202803 protein. (585 aa)
	TVG1202787	Hypothetical protein. (352 aa)
	TVG1395987	TVG1395987 protein. (111 aa)
	TVG1396300	ABC transport system ATP-binding protein P1P2A1A2. (477 aa)
	TVG1397733	ABC transport system ATP-binding protein P1P2A1A2. (522 aa)
	TVG1399304	ABC transport system permease protein P1P2A1A2. (319 aa)
	TVG1400273	ABC transport system permease protein P1P2A1A2. (363 aa)
	TVG1401500	Hypothetical protein. (963 aa)
	TVG1405254	TVG1405254 protein. (186 aa)
	TVG1479283	Hypothetical protein. (399 aa)
	TVG1502957	TVG1502957 protein. (928 aa)

Your Current Organism:

Thermoplasma volcanium

NCBI taxonomy Id: 273116
Other names: T. volcanium GSS1, Thermoplasma volcanium GSS1, Thermoplasma volcanium str. GSS1, Thermoplasma volcanium strain GSS1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVG0209075	TVG0210789	gene:9380973	gene:9380974	TVG0209075 protein.	TVG0210789 protein.	0.472
TVG0209075	TVG0211687	gene:9380973	gene:9380975	TVG0209075 protein.	ABC transport system permease protein P1P2A.	0.472
TVG0209075	TVG0212495	gene:9380973	gene:9380976	TVG0209075 protein.	ABC transport system permease protein P1P2A.	0.472
TVG0209075	TVG0213590	gene:9380973	gene:9380977	TVG0209075 protein.	ABC transport system ATP-binding protein P1P2A.	0.412
TVG0210789	TVG0209075	gene:9380974	gene:9380973	TVG0210789 protein.	TVG0209075 protein.	0.472
TVG0210789	TVG0211687	gene:9380974	gene:9380975	TVG0210789 protein.	ABC transport system permease protein P1P2A.	0.993
TVG0210789	TVG0212495	gene:9380974	gene:9380976	TVG0210789 protein.	ABC transport system permease protein P1P2A.	0.993
TVG0210789	TVG0213590	gene:9380974	gene:9380977	TVG0210789 protein.	ABC transport system ATP-binding protein P1P2A.	0.899
TVG0210789	TVG1197131	gene:9380974	gene:9381970	TVG0210789 protein.	ABC transport system permease protein SP1P2A.	0.874
TVG0210789	TVG1198021	gene:9380974	gene:9381971	TVG0210789 protein.	ABC transport system permease protein SP1P2A.	0.892
TVG0211687	TVG0209075	gene:9380975	gene:9380973	ABC transport system permease protein P1P2A.	TVG0209075 protein.	0.472
TVG0211687	TVG0210789	gene:9380975	gene:9380974	ABC transport system permease protein P1P2A.	TVG0210789 protein.	0.993
TVG0211687	TVG0212495	gene:9380975	gene:9380976	ABC transport system permease protein P1P2A.	ABC transport system permease protein P1P2A.	0.997
TVG0211687	TVG0213590	gene:9380975	gene:9380977	ABC transport system permease protein P1P2A.	ABC transport system ATP-binding protein P1P2A.	0.968
TVG0211687	TVG1196198	gene:9380975	gene:9381969	ABC transport system permease protein P1P2A.	ABC transport system protein SP1P2A.	0.885
TVG0211687	TVG1198021	gene:9380975	gene:9381971	ABC transport system permease protein P1P2A.	ABC transport system permease protein SP1P2A.	0.975
TVG0211687	TVG1199143	gene:9380975	gene:9381972	ABC transport system permease protein P1P2A.	ABC transport system ATP-binding protein SP1P2A.	0.700
TVG0212495	TVG0209075	gene:9380976	gene:9380973	ABC transport system permease protein P1P2A.	TVG0209075 protein.	0.472
TVG0212495	TVG0210789	gene:9380976	gene:9380974	ABC transport system permease protein P1P2A.	TVG0210789 protein.	0.993
TVG0212495	TVG0211687	gene:9380976	gene:9380975	ABC transport system permease protein P1P2A.	ABC transport system permease protein P1P2A.	0.997