(8 nodes) MetI-like superfamily network (Thermoplasma volcanium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TVG1197131	ABC transport system permease protein SP1P2A. (309 aa)
	TVG1198021	ABC transport system permease protein SP1P2A. (295 aa)
	TVG1399304	ABC transport system permease protein P1P2A1A2. (319 aa)
	TVG1400273	ABC transport system permease protein P1P2A1A2. (363 aa)
	TVG0211687	ABC transport system permease protein P1P2A. (296 aa)
	TVG0212495	ABC transport system permease protein P1P2A. (268 aa)
	TVG0378375	ABC transport system ATP-binding protein PA. (541 aa)
	TVG0536211	ABC transport system permease protein PA. (251 aa)

Your Current Organism:

Thermoplasma volcanium

NCBI taxonomy Id: 273116
Other names: T. volcanium GSS1, Thermoplasma volcanium GSS1, Thermoplasma volcanium str. GSS1, Thermoplasma volcanium strain GSS1

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TVG0211687	TVG0212495	gene:9380975	gene:9380976	ABC transport system permease protein P1P2A.	ABC transport system permease protein P1P2A.	0.997
TVG0211687	TVG1198021	gene:9380975	gene:9381971	ABC transport system permease protein P1P2A.	ABC transport system permease protein SP1P2A.	0.975
TVG0212495	TVG0211687	gene:9380976	gene:9380975	ABC transport system permease protein P1P2A.	ABC transport system permease protein P1P2A.	0.997
TVG0212495	TVG1197131	gene:9380976	gene:9381970	ABC transport system permease protein P1P2A.	ABC transport system permease protein SP1P2A.	0.974
TVG1197131	TVG0212495	gene:9381970	gene:9380976	ABC transport system permease protein SP1P2A.	ABC transport system permease protein P1P2A.	0.974
TVG1197131	TVG1198021	gene:9381970	gene:9381971	ABC transport system permease protein SP1P2A.	ABC transport system permease protein SP1P2A.	0.998
TVG1198021	TVG0211687	gene:9381971	gene:9380975	ABC transport system permease protein SP1P2A.	ABC transport system permease protein P1P2A.	0.975
TVG1198021	TVG1197131	gene:9381971	gene:9381970	ABC transport system permease protein SP1P2A.	ABC transport system permease protein SP1P2A.	0.998
TVG1399304	TVG1400273	gene:9382162	gene:9382163	ABC transport system permease protein P1P2A1A2.	ABC transport system permease protein P1P2A1A2.	0.999
TVG1400273	TVG1399304	gene:9382163	gene:9382162	ABC transport system permease protein P1P2A1A2.	ABC transport system permease protein P1P2A1A2.	0.999