(10 nodes) Mixed, incl. FecCD transport family, and S1 domain network (Ureaplasma parvum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	UU017	Hypothetical. (265 aa)
	lip3	Triacylglycerol lipase. (289 aa)
	fatC-1	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (340 aa)
	fatD-1	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (341 aa)
	ABCsbp-1	Putative ABC substrate-binding protein - iron. (470 aa)
	fecC	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (367 aa)
	ABCsbp-2	Putative ABC substrate-binding protein - iron. (323 aa)
	ABCsbp-3	Putative ABC substrate-binding protein - iron. (248 aa)
	UU029	Hypothetical. (706 aa)
	fhuC	Ferrichrome transport ATP-binding protein. (387 aa)

Your Current Organism:

Ureaplasma parvum

NCBI taxonomy Id: 273119
Other names: U. parvum serovar 3 str. ATCC 700970, Ureaplasma parvum serovar 3 str. ATCC 700970, Ureaplasma parvum serovar 3 strain ATCC 700970, Ureaplasma urealyticum ATCC 700970

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCsbp-1	ABCsbp-2	UU024	UU027	Putative ABC substrate-binding protein - iron.	Putative ABC substrate-binding protein - iron.	0.440
ABCsbp-1	ABCsbp-3	UU024	UU028	Putative ABC substrate-binding protein - iron.	Putative ABC substrate-binding protein - iron.	0.434
ABCsbp-1	UU017	UU024	UU017	Putative ABC substrate-binding protein - iron.	Hypothetical.	0.505
ABCsbp-1	fatC-1	UU024	UU022	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.784
ABCsbp-1	fatD-1	UU024	UU023	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.784
ABCsbp-1	fecC	UU024	UU025	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.758
ABCsbp-1	lip3	UU024	UU021	Putative ABC substrate-binding protein - iron.	Triacylglycerol lipase.	0.505
ABCsbp-2	ABCsbp-1	UU027	UU024	Putative ABC substrate-binding protein - iron.	Putative ABC substrate-binding protein - iron.	0.440
ABCsbp-2	ABCsbp-3	UU027	UU028	Putative ABC substrate-binding protein - iron.	Putative ABC substrate-binding protein - iron.	0.796
ABCsbp-2	UU029	UU027	UU029	Putative ABC substrate-binding protein - iron.	Hypothetical.	0.751
ABCsbp-2	fatC-1	UU027	UU022	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.432
ABCsbp-2	fatD-1	UU027	UU023	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.432
ABCsbp-2	fecC	UU027	UU025	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.458
ABCsbp-3	ABCsbp-1	UU028	UU024	Putative ABC substrate-binding protein - iron.	Putative ABC substrate-binding protein - iron.	0.434
ABCsbp-3	ABCsbp-2	UU028	UU027	Putative ABC substrate-binding protein - iron.	Putative ABC substrate-binding protein - iron.	0.796
ABCsbp-3	UU029	UU028	UU029	Putative ABC substrate-binding protein - iron.	Hypothetical.	0.780
ABCsbp-3	fatC-1	UU028	UU022	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.426
ABCsbp-3	fatD-1	UU028	UU023	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.426
ABCsbp-3	fecC	UU028	UU025	Putative ABC substrate-binding protein - iron.	Ferrichrome ABC transporter; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.	0.451
UU017	ABCsbp-1	UU017	UU024	Hypothetical.	Putative ABC substrate-binding protein - iron.	0.505

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