(9 nodes) Small ribosomal subunit network (Wolinella succinogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WS2170	Hypothetical protein. (179 aa)
	RPSE	30S RIBOSOMAL PROTEIN S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (146 aa)
	RPSD	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (208 aa)
	RPSA	30S RIBOSOMAL PROTEIN S1. (553 aa)
	rps7	PUTATIVE 30S RIBOSOMAL PROTEIN S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (155 aa)
	rpsL	S12 HOMOLOG; With S4 and S5 plays an important role in translational accuracy. (134 aa)
	RPSB	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family. (271 aa)
	rpsS	30S RIBOSOMAL SUBUNIT PROTEIN S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa)
	WS1927	HYPOTHETICAL PROTEIN-Signal transduction histidine kinase. (761 aa)

Your Current Organism:

Wolinella succinogenes

NCBI taxonomy Id: 273121
Other names: W. succinogenes DSM 1740, Wolinella succinogenes DSM 1740

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPSA	RPSB	WS1311	WS0194	30S RIBOSOMAL PROTEIN S1.	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	0.983
RPSA	RPSD	WS1311	WS1693	30S RIBOSOMAL PROTEIN S1.	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.997
RPSA	RPSE	WS1311	WS1700	30S RIBOSOMAL PROTEIN S1.	30S RIBOSOMAL PROTEIN S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.996
RPSA	WS2170	WS1311	WS2170	30S RIBOSOMAL PROTEIN S1.	Hypothetical protein.	0.831
RPSA	rps7	WS1311	WS0469	30S RIBOSOMAL PROTEIN S1.	PUTATIVE 30S RIBOSOMAL PROTEIN S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.991
RPSA	rpsL	WS1311	WS0468	30S RIBOSOMAL PROTEIN S1.	S12 HOMOLOG; With S4 and S5 plays an important role in translational accuracy.	0.990
RPSA	rpsS	WS1311	WS1712	30S RIBOSOMAL PROTEIN S1.	30S RIBOSOMAL SUBUNIT PROTEIN S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.961
RPSB	RPSA	WS0194	WS1311	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S1.	0.983
RPSB	RPSD	WS0194	WS1693	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.998
RPSB	RPSE	WS0194	WS1700	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.997
RPSB	WS2170	WS0194	WS2170	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	Hypothetical protein.	0.830
RPSB	rps7	WS0194	WS0469	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	PUTATIVE 30S RIBOSOMAL PROTEIN S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
RPSB	rpsL	WS0194	WS0468	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	S12 HOMOLOG; With S4 and S5 plays an important role in translational accuracy.	0.997
RPSB	rpsS	WS0194	WS1712	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL SUBUNIT PROTEIN S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.997
RPSD	RPSA	WS1693	WS1311	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	30S RIBOSOMAL PROTEIN S1.	0.997
RPSD	RPSB	WS1693	WS0194	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	0.998
RPSD	RPSE	WS1693	WS1700	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	30S RIBOSOMAL PROTEIN S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.999
RPSD	WS2170	WS1693	WS2170	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	Hypothetical protein.	0.838
RPSD	rps7	WS1693	WS0469	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	PUTATIVE 30S RIBOSOMAL PROTEIN S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
RPSD	rpsL	WS1693	WS0468	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	S12 HOMOLOG; With S4 and S5 plays an important role in translational accuracy.	0.997