(11 nodes) Small ribosomal subunit network (Wolinella succinogenes)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	WS2170	Hypothetical protein. (179 aa)
	RPSB	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family. (271 aa)
	rps7	PUTATIVE 30S RIBOSOMAL PROTEIN S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (155 aa)
	rpsP	30S ribosomal protein S16, WSU0548; Belongs to the bacterial ribosomal protein bS16 family. (77 aa)
	rpsT	30S RIBOSOMAL PROTEIN S20; Binds directly to 16S ribosomal RNA. (91 aa)
	RPSD	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (208 aa)
	RPSE	30S RIBOSOMAL PROTEIN S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. (146 aa)
	RPSH	30S RIBOSOMAL PROTEIN S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa)
	RPSQ	30S RIBOSOMAL PROTEIN S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (88 aa)
	RPSC	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (236 aa)
	rpsS	30S RIBOSOMAL SUBUNIT PROTEIN S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (93 aa)

Your Current Organism:

Wolinella succinogenes

NCBI taxonomy Id: 273121
Other names: W. succinogenes DSM 1740, Wolinella succinogenes DSM 1740

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPSB	RPSC	WS0194	WS1710	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.998
RPSB	RPSD	WS0194	WS1693	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.998
RPSB	RPSE	WS0194	WS1700	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.997
RPSB	RPSH	WS0194	WS1703	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.997
RPSB	RPSQ	WS0194	WS1707	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.997
RPSB	WS2170	WS0194	WS2170	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	Hypothetical protein.	0.830
RPSB	rps7	WS0194	WS0469	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	PUTATIVE 30S RIBOSOMAL PROTEIN S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
RPSB	rpsP	WS0194	WS0548	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S16, WSU0548; Belongs to the bacterial ribosomal protein bS16 family.	0.997
RPSB	rpsS	WS0194	WS1712	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL SUBUNIT PROTEIN S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.997
RPSB	rpsT	WS0194	WS0817	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	30S RIBOSOMAL PROTEIN S20; Binds directly to 16S ribosomal RNA.	0.976
RPSC	RPSB	WS1710	WS0194	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S RIBOSOMAL PROTEIN S2; Belongs to the universal ribosomal protein uS2 family.	0.998
RPSC	RPSD	WS1710	WS1693	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S RIBOSOMAL PROTEIN S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.	0.999
RPSC	RPSE	WS1710	WS1700	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S RIBOSOMAL PROTEIN S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.999
RPSC	RPSH	WS1710	WS1703	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S RIBOSOMAL PROTEIN S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.999
RPSC	RPSQ	WS1710	WS1707	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S RIBOSOMAL PROTEIN S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.998
RPSC	WS2170	WS1710	WS2170	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	Hypothetical protein.	0.830
RPSC	rps7	WS1710	WS0469	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	PUTATIVE 30S RIBOSOMAL PROTEIN S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
RPSC	rpsP	WS1710	WS0548	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S ribosomal protein S16, WSU0548; Belongs to the bacterial ribosomal protein bS16 family.	0.983
RPSC	rpsS	WS1710	WS1712	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S RIBOSOMAL SUBUNIT PROTEIN S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.999
RPSC	rpsT	WS1710	WS0817	30S RIBOSOMAL PROTEIN S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	30S RIBOSOMAL PROTEIN S20; Binds directly to 16S ribosomal RNA.	0.931