(12 nodes) Cytosolic large ribosomal subunit network (Penicillium expansum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_057060	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family. (1039 aa)
	PEX2_106560	Ribosomal protein L34Ae. (136 aa)
	PEX2_035050	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (242 aa)
	PEX2_050760	Translation elongation/initiation factor/Ribosomal, beta-barrel. (109 aa)
	PEX2_050190	Ribosomal protein L21e. (160 aa)
	PEX2_049540	Ribosomal protein L6. (494 aa)
	PEX2_021900	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family. (1266 aa)
	PEX2_002370	Nucleic acid-binding, OB-fold. (254 aa)
	PEX2_091540	Ribosomal protein L24e-like protein. (158 aa)
	PEX2_035800	Ribosomal protein L22e. (124 aa)
	PEX2_061750	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal. (300 aa)
	PEX2_052640	Ribosomal protein L30, N-terminal. (251 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_002370	PEX2_021900	A0A0A2JRK9	A0A0A2JQP9	Nucleic acid-binding, OB-fold.	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	0.999
PEX2_002370	PEX2_035050	A0A0A2JRK9	A0A0A2IQN5	Nucleic acid-binding, OB-fold.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
PEX2_002370	PEX2_035800	A0A0A2JRK9	A0A0A2JZK4	Nucleic acid-binding, OB-fold.	Ribosomal protein L22e.	0.999
PEX2_002370	PEX2_049540	A0A0A2JRK9	A0A0A2JJZ3	Nucleic acid-binding, OB-fold.	Ribosomal protein L6.	0.999
PEX2_002370	PEX2_050190	A0A0A2JRK9	A0A0A2J1E3	Nucleic acid-binding, OB-fold.	Ribosomal protein L21e.	0.999
PEX2_002370	PEX2_050760	A0A0A2JRK9	A0A0A2J108	Nucleic acid-binding, OB-fold.	Translation elongation/initiation factor/Ribosomal, beta-barrel.	0.999
PEX2_002370	PEX2_052640	A0A0A2JRK9	A0A0A2KDV1	Nucleic acid-binding, OB-fold.	Ribosomal protein L30, N-terminal.	0.999
PEX2_002370	PEX2_057060	A0A0A2JRK9	A0A0A2IAX1	Nucleic acid-binding, OB-fold.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
PEX2_002370	PEX2_061750	A0A0A2JRK9	A0A0A2KDJ7	Nucleic acid-binding, OB-fold.	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal.	0.999
PEX2_002370	PEX2_091540	A0A0A2JRK9	A0A0A2JVC9	Nucleic acid-binding, OB-fold.	Ribosomal protein L24e-like protein.	0.999
PEX2_002370	PEX2_106560	A0A0A2JRK9	A0A0A2IJ87	Nucleic acid-binding, OB-fold.	Ribosomal protein L34Ae.	0.999
PEX2_021900	PEX2_002370	A0A0A2JQP9	A0A0A2JRK9	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	Nucleic acid-binding, OB-fold.	0.999
PEX2_021900	PEX2_035050	A0A0A2JQP9	A0A0A2IQN5	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
PEX2_021900	PEX2_035800	A0A0A2JQP9	A0A0A2JZK4	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L22e.	0.999
PEX2_021900	PEX2_049540	A0A0A2JQP9	A0A0A2JJZ3	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L6.	0.999
PEX2_021900	PEX2_050190	A0A0A2JQP9	A0A0A2J1E3	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21e.	0.999
PEX2_021900	PEX2_050760	A0A0A2JQP9	A0A0A2J108	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	Translation elongation/initiation factor/Ribosomal, beta-barrel.	0.999
PEX2_021900	PEX2_052640	A0A0A2JQP9	A0A0A2KDV1	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L30, N-terminal.	0.999
PEX2_021900	PEX2_057060	A0A0A2JQP9	A0A0A2IAX1	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
PEX2_021900	PEX2_061750	A0A0A2JQP9	A0A0A2KDJ7	Translation elongation/initiation factor/Ribosomal, beta-barrel; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal.	0.999