10 items (Penicillium expansum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PEX2_086420	25S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family. (282 aa)
	PEX2_057600	Nuclear envelope, Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins. (311 aa)
	PEX2_095960	Exonuclease, RNase T/DNA polymerase III. (797 aa)
	PEX2_049750	Exonuclease, RNase T/DNA polymerase III. (505 aa)
	PEX2_066280	Uncharacterized protein. (451 aa)
	PEX2_034570	AB hydrolase-1 domain-containing protein. (250 aa)
	PEX2_021930	Exonuclease, RNase T/DNA polymerase III. (579 aa)
	PEX2_067600	Heterokaryon incompatibility. (500 aa)
	PEX2_041710	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (1125 aa)
	PEX2_028190	SMP-30/Gluconolaconase/LRE-like region. (340 aa)

Your Current Organism:

Penicillium expansum

NCBI taxonomy Id: 27334
Other names: ATCC 7861, CBS 325.48, P. expansum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PEX2_021930	PEX2_028190	A0A0A2K006	A0A0A2KBI4	Exonuclease, RNase T/DNA polymerase III.	SMP-30/Gluconolaconase/LRE-like region.	0.466
PEX2_021930	PEX2_034570	A0A0A2K006	A0A0A2JXX6	Exonuclease, RNase T/DNA polymerase III.	AB hydrolase-1 domain-containing protein.	0.466
PEX2_021930	PEX2_041710	A0A0A2K006	A0A0A2K5M4	Exonuclease, RNase T/DNA polymerase III.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.428
PEX2_021930	PEX2_067600	A0A0A2K006	A0A0A2K1F0	Exonuclease, RNase T/DNA polymerase III.	Heterokaryon incompatibility.	0.466
PEX2_021930	PEX2_086420	A0A0A2K006	A0A0A2I9Y9	Exonuclease, RNase T/DNA polymerase III.	25S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family.	0.466
PEX2_021930	PEX2_095960	A0A0A2K006	A0A0A2J8E2	Exonuclease, RNase T/DNA polymerase III.	Exonuclease, RNase T/DNA polymerase III.	0.680
PEX2_028190	PEX2_021930	A0A0A2KBI4	A0A0A2K006	SMP-30/Gluconolaconase/LRE-like region.	Exonuclease, RNase T/DNA polymerase III.	0.466
PEX2_028190	PEX2_041710	A0A0A2KBI4	A0A0A2K5M4	SMP-30/Gluconolaconase/LRE-like region.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.759
PEX2_028190	PEX2_049750	A0A0A2KBI4	A0A0A2JJA5	SMP-30/Gluconolaconase/LRE-like region.	Exonuclease, RNase T/DNA polymerase III.	0.466
PEX2_028190	PEX2_057600	A0A0A2KBI4	A0A0A2IAP8	SMP-30/Gluconolaconase/LRE-like region.	Nuclear envelope, Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins.	0.480
PEX2_028190	PEX2_066280	A0A0A2KBI4	A0A0A2JTC4	SMP-30/Gluconolaconase/LRE-like region.	Uncharacterized protein.	0.587
PEX2_028190	PEX2_086420	A0A0A2KBI4	A0A0A2I9Y9	SMP-30/Gluconolaconase/LRE-like region.	25S rRNA adenine-N(1) methyltransferase; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of an adenine present in helix 65 in 25S rRNA; Belongs to the BMT2 family.	0.627
PEX2_034570	PEX2_021930	A0A0A2JXX6	A0A0A2K006	AB hydrolase-1 domain-containing protein.	Exonuclease, RNase T/DNA polymerase III.	0.466
PEX2_034570	PEX2_041710	A0A0A2JXX6	A0A0A2K5M4	AB hydrolase-1 domain-containing protein.	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	0.759
PEX2_034570	PEX2_049750	A0A0A2JXX6	A0A0A2JJA5	AB hydrolase-1 domain-containing protein.	Exonuclease, RNase T/DNA polymerase III.	0.466
PEX2_034570	PEX2_057600	A0A0A2JXX6	A0A0A2IAP8	AB hydrolase-1 domain-containing protein.	Nuclear envelope, Cut8; Involved in ubiquitin-mediated protein degradation. Regulatory factor in the ubiquitin/proteasome pathway that controls the turnover of proteasome substrates. Targets proteasomes to the nucleus and facilitates the degradation of nuclear proteins.	0.480
PEX2_034570	PEX2_066280	A0A0A2JXX6	A0A0A2JTC4	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.587
PEX2_041710	PEX2_021930	A0A0A2K5M4	A0A0A2K006	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Exonuclease, RNase T/DNA polymerase III.	0.428
PEX2_041710	PEX2_028190	A0A0A2K5M4	A0A0A2KBI4	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	SMP-30/Gluconolaconase/LRE-like region.	0.759
PEX2_041710	PEX2_034570	A0A0A2K5M4	A0A0A2JXX6	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	AB hydrolase-1 domain-containing protein.	0.759